Depends On Me |
altcdfenvs, AnnotationHubData, ATACseqQC, bambu, bandle, betaHMM, Biostrings, BiSeq, BSgenome, bumphunter, Cardinal, CellMapper, CexoR, chimeraviz, ChIPpeakAnno, chipseq, ChIPseqR, ClassifyR, cliProfiler, CODEX, CompoundDb, coseq, CSAR, CSSQ, DelayedArray, DelayedDataFrame, DESeq2, DEXSeq, DirichletMultinomial, DMCFB, DMCHMM, DMRcaller, epigenomix, ExperimentHubData, ExpressionAtlas, fCCAC, GA4GHclient, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenomicTuples, GeomxTools, girafe, groHMM, Gviz, hdxmsqc, HelloRanges, HERON, InTAD, IntEREst, IRanges, LinTInd, LoomExperiment, m6Aboost, MetNet, MotifDb, MSnbase, MuData, MultimodalExperiment, NADfinder, NanoStringNCTools, NBAMSeq, octad, OGRE, OTUbase, padma, PSMatch, pwalign, Rcwl, RegEnrich, RepViz, RNAmodR, RnBeads, S4Arrays, scDataviz, screenCounter, segmentSeq, seqArchRplus, SeqGate, SparseArray, Spectra, SQLDataFrame, Structstrings, topdownr, TreeSummarizedExperiment, TRESS, triplex, txdbmaker, updateObject, VariantExperiment, VariantTools, vulcan, XVector, pd.ag, pd.aragene.1.0.st, pd.aragene.1.1.st, pd.ath1.121501, pd.barley1, pd.bovgene.1.0.st, pd.bovgene.1.1.st, pd.bovine, pd.bsubtilis, pd.cangene.1.0.st, pd.cangene.1.1.st, pd.canine, pd.canine.2, pd.celegans, pd.chicken, pd.chigene.1.0.st, pd.chigene.1.1.st, pd.chogene.2.0.st, pd.chogene.2.1.st, pd.citrus, pd.clariom.d.human, pd.clariom.s.human, pd.clariom.s.human.ht, pd.clariom.s.mouse, pd.clariom.s.mouse.ht, pd.clariom.s.rat, pd.clariom.s.rat.ht, pd.cotton, pd.cyngene.1.0.st, pd.cyngene.1.1.st, pd.cyrgene.1.0.st, pd.cyrgene.1.1.st, pd.cytogenetics.array, pd.drogene.1.0.st, pd.drogene.1.1.st, pd.drosgenome1, pd.drosophila.2, pd.e.coli.2, pd.ecoli, pd.ecoli.asv2, pd.elegene.1.0.st, pd.elegene.1.1.st, pd.equgene.1.0.st, pd.equgene.1.1.st, pd.felgene.1.0.st, pd.felgene.1.1.st, pd.fingene.1.0.st, pd.fingene.1.1.st, pd.genomewidesnp.5, pd.genomewidesnp.6, pd.guigene.1.0.st, pd.guigene.1.1.st, pd.hc.g110, pd.hg.focus, pd.hg.u133.plus.2, pd.hg.u133a, pd.hg.u133a.2, pd.hg.u133a.tag, pd.hg.u133b, pd.hg.u219, pd.hg.u95a, pd.hg.u95av2, pd.hg.u95b, pd.hg.u95c, pd.hg.u95d, pd.hg.u95e, pd.hg18.60mer.expr, pd.ht.hg.u133.plus.pm, pd.ht.hg.u133a, pd.ht.mg.430a, pd.hta.2.0, pd.hu6800, pd.huex.1.0.st.v2, pd.hugene.1.0.st.v1, pd.hugene.1.1.st.v1, pd.hugene.2.0.st, pd.hugene.2.1.st, pd.maize, pd.mapping250k.nsp, pd.mapping250k.sty, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.margene.1.0.st, pd.margene.1.1.st, pd.medgene.1.0.st, pd.medgene.1.1.st, pd.medicago, pd.mg.u74a, pd.mg.u74av2, pd.mg.u74b, pd.mg.u74bv2, pd.mg.u74c, pd.mg.u74cv2, pd.mirna.1.0, pd.mirna.2.0, pd.mirna.3.0, pd.mirna.4.0, pd.moe430a, pd.moe430b, pd.moex.1.0.st.v1, pd.mogene.1.0.st.v1, pd.mogene.1.1.st.v1, pd.mogene.2.0.st, pd.mogene.2.1.st, pd.mouse430.2, pd.mouse430a.2, pd.mta.1.0, pd.mu11ksuba, pd.mu11ksubb, pd.nugo.hs1a520180, pd.nugo.mm1a520177, pd.ovigene.1.0.st, pd.ovigene.1.1.st, pd.pae.g1a, pd.plasmodium.anopheles, pd.poplar, pd.porcine, pd.porgene.1.0.st, pd.porgene.1.1.st, pd.rabgene.1.0.st, pd.rabgene.1.1.st, pd.rae230a, pd.rae230b, pd.raex.1.0.st.v1, pd.ragene.1.0.st.v1, pd.ragene.1.1.st.v1, pd.ragene.2.0.st, pd.ragene.2.1.st, pd.rat230.2, pd.rcngene.1.0.st, pd.rcngene.1.1.st, pd.rg.u34a, pd.rg.u34b, pd.rg.u34c, pd.rhegene.1.0.st, pd.rhegene.1.1.st, pd.rhesus, pd.rice, pd.rjpgene.1.0.st, pd.rjpgene.1.1.st, pd.rn.u34, pd.rta.1.0, pd.rusgene.1.0.st, pd.rusgene.1.1.st, pd.s.aureus, pd.soybean, pd.soygene.1.0.st, pd.soygene.1.1.st, pd.sugar.cane, pd.tomato, pd.u133.x3p, pd.vitis.vinifera, pd.wheat, pd.x.laevis.2, pd.x.tropicalis, pd.xenopus.laevis, pd.yeast.2, pd.yg.s98, pd.zebgene.1.0.st, pd.zebgene.1.1.st, pd.zebrafish, curatedPCaData, scATAC.Explorer, generegulation |
Imports Me |
ADImpute, adverSCarial, affycoretools, aggregateBioVar, airpart, alabaster.base, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf, ALDEx2, AllelicImbalance, amplican, ANCOMBC, AneuFinder, animalcules, AnnotationDbi, AnnotationForge, AnnotationHub, annotatr, appreci8R, ASpli, ASURAT, ATACseqTFEA, atena, autonomics, BadRegionFinder, ballgown, Banksy, barcodetrackR, BASiCS, batchelor, BayesSpace, bettr, BindingSiteFinder, BiocHubsShiny, BiocIO, BiocNeighbors, BiocOncoTK, BiocSet, BiocSingular, biotmle, biovizBase, biscuiteer, BiSeq, bluster, bnbc, BPRMeth, branchpointer, breakpointR, BREW3R.r, BSgenomeForge, bsseq, BumpyMatrix, BUSpaRse, BUSseq, CAGEfightR, CAGEr, cardelino, CardinalIO, casper, CATALYST, cBioPortalData, ccfindR, celaref, celda, CellBarcode, censcyt, Cepo, CeTF, cfdnakit, CHETAH, chipenrich, ChIPexoQual, ChIPQC, ChIPseeker, ChromSCape, chromstaR, chromVAR, cicero, circRNAprofiler, CircSeqAlignTk, CiteFuse, cleanUpdTSeq, cleaver, CluMSID, clusterExperiment, clustifyr, CNEr, cn.mops, CNVMetrics, CNVPanelizer, CNVRanger, COCOA, CoGAPS, Cogito, comapr, compEpiTools, consensusDE, consensusSeekeR, CoreGx, CoverageView, crisprBase, crisprDesign, CRISPRseek, crisprShiny, CrispRVariants, crisprViz, csaw, CTDquerier, cummeRbund, CuratedAtlasQueryR, customProDB, cydar, cytofQC, cytoKernel, cytomapper, cytoviewer, DAMEfinder, debrowser, DECIPHER, decompTumor2Sig, decontX, deconvR, DEFormats, DegCre, DegNorm, DEGreport, DelayedMatrixStats, derfinder, derfinderHelper, derfinderPlot, DEScan2, DESpace, DEWSeq, DiffBind, diffcyt, diffHic, diffUTR, Dino, DiscoRhythm, dittoSeq, DMRcate, dmrseq, DNAfusion, doseR, dreamlet, DRIMSeq, DropletUtils, drugTargetInteractions, dStruct, easyRNASeq, eisaR, ELMER, enhancerHomologSearch, EnrichmentBrowser, ensembldb, ensemblVEP, epigraHMM, EpiMix, epimutacions, epiregulon, epistack, EpiTxDb, epivizr, epivizrData, epivizrStandalone, erma, esATAC, EventPointer, ExperimentHub, ExperimentSubset, ExploreModelMatrix, extraChIPs, factR, FastqCleaner, fastseg, FilterFFPE, FindIT2, fishpond, FLAMES, flowCore, flowWorkspace, FRASER, FuseSOM, GA4GHshiny, gcapc, gDNAx, gDRcore, gDRimport, gDRutils, GDSArray, gemma.R, GeneRegionScan, GENESIS, GeneTonic, genomation, GenomAutomorphism, genomeIntervals, GenomicAlignments, GenomicFiles, GenomicInteractionNodes, GenomicInteractions, GenomicOZone, GenomicSuperSignature, ggbio, Glimma, gmapR, gmoviz, GOpro, GOTHiC, GRaNIE, GRmetrics, GSEABenchmarkeR, GSVA, GUIDEseq, gwascat, h5vc, HDF5Array, hermes, HicAggR, HiCBricks, HiCcompare, HiCDOC, HiCExperiment, HiContacts, HiCool, hicVennDiagram, HiLDA, hipathia, hmdbQuery, HTSeqGenie, HumanTranscriptomeCompendium, icetea, ideal, IFAA, ILoReg, IMAS, imcRtools, INSPEcT, InteractionSet, InteractiveComplexHeatmap, InterMineR, iSEE, iSEEde, iSEEhub, iSEEpathways, iSEEu, IsoBayes, IsoformSwitchAnalyzeR, isomiRs, IVAS, ivygapSE, karyoploteR, katdetectr, kebabs, knowYourCG, lefser, lemur, limpca, lionessR, lipidr, lisaClust, loci2path, LOLA, lute, MACSr, MADSEQ, magpie, MAI, mariner, marr, MAST, mbkmeans, mCSEA, MEAL, meshr, MesKit, metabCombiner, MetaboAnnotation, metaseqR2, MetCirc, methInheritSim, methodical, MethReg, methrix, methylCC, methylInheritance, methylKit, methylPipe, methylSig, methylumi, MGnifyR, mia, miaSim, miaViz, microbiomeMarker, MICSQTL, midasHLA, miloR, mimager, minfi, MinimumDistance, MIRA, MiRaGE, missMethyl, missRows, mitoClone2, MMDiff2, moanin, mobileRNA, Modstrings, MoleculeExperiment, monaLisa, mosaics, mosdef, MOSim, Motif2Site, motifbreakR, motifmatchr, motifTestR, mpra, msa, MsBackendMassbank, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsCoreUtils, MsExperiment, msgbsR, MSPrep, MultiAssayExperiment, MultiDataSet, MultiRNAflow, multistateQTL, mumosa, muscat, musicatk, MutationalPatterns, mygene, myvariant, NanoMethViz, ncRNAtools, nearBynding, nucleoSim, nucleR, nullranges, oligoClasses, omicsViewer, oncoscanR, ontoProc, openPrimeR, ORFik, OrganismDbi, Organism.dplyr, orthos, OUTRIDER, OutSplice, packFinder, PAIRADISE, pairedGSEA, panelcn.mops, PAST, pcaExplorer, PDATK, pdInfoBuilder, Pedixplorer, periodicDNA, pgxRpi, PharmacoGx, PhIPData, PhosR, PING, pipeComp, plyinteractions, plyranges, pmp, pogos, polyester, pqsfinder, pram, prebs, preciseTAD, primirTSS, proActiv, procoil, proDA, profileplyr, ProteoDisco, PureCN, PWMEnrich, qcmetrics, QFeatures, qpgraph, qsea, QTLExperiment, QuasR, R3CPET, R453Plus1Toolbox, RadioGx, raer, RaggedExperiment, RAIDS, ramr, RareVariantVis, RBioFormats, RCAS, RcisTarget, RcwlPipelines, recount, recount3, recountmethylation, recoup, RegionalST, regioneR, regionReport, regsplice, regutools, REMP, Repitools, ResidualMatrix, RESOLVE, ReUseData, rexposome, rfaRm, RGMQL, RgnTX, rGREAT, RiboDiPA, RiboProfiling, ribor, riboSeqR, ribosomeProfilingQC, rifi, rifiComparative, RJMCMCNucleosomes, Rmmquant, rnaEditr, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, roar, rprimer, Rqc, Rsamtools, rScudo, RTCGAToolbox, RTN, rtracklayer, saseR, SC3, ScaledMatrix, scanMiR, scanMiRApp, SCArray, SCArray.sat, scater, scClassify, scDblFinder, scDD, scds, scHOT, scider, scmap, scMerge, scMET, SCnorm, SCOPE, scp, scPipe, scran, scRepertoire, scRNAseqApp, scruff, scTensor, scTGIF, scTreeViz, scuttle, scviR, sechm, segmenter, SeqArray, seqCAT, seqsetvis, SeqSQC, SeqVarTools, sesame, SEtools, sevenbridges, sevenC, SGSeq, ShortRead, simona, simPIC, simpleSeg, SingleCellAlleleExperiment, SingleCellExperiment, singleCellTK, SingleR, singscore, sitadela, skewr, slingshot, SMITE, SNPhood, soGGi, SomaticSignatures, SOMNiBUS, Spaniel, SpatialExperiment, SpatialFeatureExperiment, spatialHeatmap, SpatialOmicsOverlay, spatzie, spicyR, spiky, spillR, splatter, SpliceWiz, SplicingGraphs, SPLINTER, SpotClean, sRACIPE, srnadiff, standR, Statial, strandCheckR, struct, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, SynExtend, systemPipeR, tadar, TAPseq, TBSignatureProfiler, TCGAbiolinks, TCGAutils, TENxIO, terraTCGAdata, TFBSTools, TFHAZ, tidybulk, tidyCoverage, tidySingleCellExperiment, tidySpatialExperiment, tidySummarizedExperiment, TileDBArray, TnT, ToxicoGx, trackViewer, tradeSeq, TrajectoryUtils, transcriptR, transmogR, TransView, treeclimbR, Trendy, tricycle, tRNA, tRNAdbImport, tRNAscanImport, TSCAN, TVTB, twoddpcr, txcutr, tximeta, UCSC.utils, Ularcirc, UMI4Cats, universalmotif, UPDhmm, VanillaICE, VariantAnnotation, VariantFiltering, VaSP, VCFArray, VDJdive, velociraptor, VisiumIO, Voyager, VplotR, wavClusteR, weitrix, wiggleplotr, xcms, xcore, XNAString, XVector, yamss, zellkonverter, BioMartGOGeneSets, fitCons.UCSC.hg19, MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase1.hs37d5, MafDb.1Kgenomes.phase3.GRCh38, MafDb.1Kgenomes.phase3.hs37d5, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.hs37d5, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.ExAC.r1.0.nonTCGA.hs37d5, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomAD.r2.1.hs37d5, MafDb.gnomADex.r2.1.GRCh38, MafDb.gnomADex.r2.1.hs37d5, MafDb.TOPMed.freeze5.hg19, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.v3.1.2.GRCh38, MafH5.gnomAD.v4.0.GRCh38, phastCons100way.UCSC.hg19, phastCons100way.UCSC.hg38, phastCons7way.UCSC.hg38, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, celldex, chipenrich.data, chipseqDBData, curatedMetagenomicData, curatedTCGAData, DNAZooData, DropletTestFiles, FlowSorted.Blood.EPIC, fourDNData, HCATonsilData, HighlyReplicatedRNASeq, HMP16SData, HMP2Data, homosapienDEE2CellScore, imcdatasets, leeBamViews, MerfishData, MetaGxPancreas, MetaScope, MethylSeqData, MicrobiomeBenchmarkData, MouseGastrulationData, MouseThymusAgeing, pd.atdschip.tiling, scMultiome, scpdata, scRNAseq, sesameData, SimBenchData, SingleCellMultiModal, SomaticCancerAlterations, spatialLIBD, TransOmicsData, tuberculosis, GeoMxWorkflows, seqpac, crispRdesignR, DR.SC, driveR, genBaRcode, geno2proteo, hoardeR, imcExperiment, karyotapR, LoopRig, MetAlyzer, microbial, MOCHA, multimedia, NIPTeR, oncoPredict, PlasmaMutationDetector, PlasmaMutationDetector2, restfulr, rliger, rnaCrosslinkOO, rsolr, SC.MEB, SCRIP, scROSHI, Signac, SpatialDDLS, TaxaNorm, toxpiR |