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MiRaGE

This is the development version of MiRaGE; for the stable release version, see MiRaGE.

MiRNA Ranking by Gene Expression


Bioconductor version: Development (3.19)

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MiRaGE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")
How to use MiRaGE Package PDF R Script
Reference Manual PDF

Details

biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software
Version 1.45.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL
Depends R (>= 3.1.0), Biobase(>= 2.23.3)
Imports BiocGenerics, S4Vectors, AnnotationDbi, BiocManager
System Requirements
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Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MiRaGE_1.45.0.tar.gz
Windows Binary MiRaGE_1.45.0.zip
macOS Binary (x86_64) MiRaGE_1.45.0.tgz
macOS Binary (arm64) MiRaGE_1.45.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MiRaGE
Bioc Package Browser https://code.bioconductor.org/browse/MiRaGE/
Package Short Url https://bioconductor.org/packages/MiRaGE/
Package Downloads Report Download Stats