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crisprShiny

This is the development version of crisprShiny; to use it, please install the devel version of Bioconductor.

Exploring curated CRISPR gRNAs via Shiny


Bioconductor version: Development (3.19)

Provides means to interactively visualize guide RNAs (gRNAs) in GuideSet objects via Shiny application. This GUI can be self-contained or as a module within a larger Shiny app. The content of the app reflects the annotations present in the passed GuideSet object, and includes intuitive tools to examine, filter, and export gRNAs, thereby making gRNA design more user-friendly.

Author: Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("crisprShiny")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("crisprShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprShiny")
Introduction to crisprShiny HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CRISPR, FunctionalGenomics, GUI, GeneTarget, Software
Version 0.99.12
In Bioconductor since BioC 3.19 (R-4.4)
License MIT + file LICENSE
Depends R (>= 4.4.0), shiny
Imports BiocGenerics, Biostrings, BSgenome, crisprBase, crisprDesign, crisprScore, crisprViz, DT, GenomeInfoDb, htmlwidgets, methods, S4Vectors, shinyBS, shinyjs, utils, waiter
System Requirements
URL https://github.com/crisprVerse/crisprShiny
Bug Reports https://github.com/crisprVerse/crisprShiny/issues
See More
Suggests BiocStyle, knitr, rmarkdown, shinyFeedback, testthat (>= 3.0.0), BSgenome.Hsapiens.UCSC.hg38
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package crisprShiny_0.99.12.tar.gz
Windows Binary crisprShiny_0.99.12.zip
macOS Binary (x86_64) crisprShiny_0.99.12.tgz
macOS Binary (arm64) crisprShiny_0.99.12.tgz
Source Repository git clone https://git.bioconductor.org/packages/crisprShiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/crisprShiny
Bioc Package Browser https://code.bioconductor.org/browse/crisprShiny/
Package Short Url https://bioconductor.org/packages/crisprShiny/
Package Downloads Report Download Stats