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gypsum

This is the development version of gypsum; to use it, please install the devel version of Bioconductor.

Interface to the gypsum REST API


Bioconductor version: Development (3.19)

Client for the gypsum REST API (https://gypsum.artifactdb.com), a cloud-based file store in the ArtifactDB ecosystem. This package provides functions for uploads, downloads, and various adminstrative and management tasks. Check out the documentation at https://github.com/ArtifactDB/gypsum-worker for more details.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("gypsum")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gypsum")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gypsum")
Hitting the gypsum API HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DataImport, Software
Version 0.99.15
In Bioconductor since BioC 3.19 (R-4.4)
License MIT + file LICENSE
Depends
Imports utils, tools, httr2, jsonlite, aws.s3, parallel, filelock
System Requirements
URL https://github.com/ArtifactDB/gypsum-R
Bug Reports https://github.com/ArtifactDB/gypsum-R/issues
See More
Suggests knitr, rmarkdown, testthat, BiocStyle, digest, jsonvalidate, DBI, RSQLite
Linking To
Enhances
Depends On Me
Imports Me celldex, scRNAseq
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gypsum_0.99.15.tar.gz
Windows Binary gypsum_0.99.15.zip
macOS Binary (x86_64) gypsum_0.99.15.tgz
macOS Binary (arm64) gypsum_0.99.15.tgz
Source Repository git clone https://git.bioconductor.org/packages/gypsum
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gypsum
Bioc Package Browser https://code.bioconductor.org/browse/gypsum/
Package Short Url https://bioconductor.org/packages/gypsum/
Package Downloads Report Download Stats