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Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Bioconductor version: Release (3.19)

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

Author: Xiaosai Yao [cre, aut] , Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Włodarczyk [aut]

Maintainer: Xiaosai Yao <xiaosai.yao at>

Citation (from within R, enter citation("scMultiome")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

scMultiome tutorial HTML R Script
Reference Manual PDF


biocViews CellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue
Version 1.4.0
License CC BY-SA 4.0
Depends AnnotationHub, ExperimentHub(>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment
Imports AzureStor, DelayedArray, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5
System Requirements
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Suggests BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData
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Depends On Me
Imports Me epiregulon
Suggests Me epiregulon.extra
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scMultiome_1.4.0.tar.gz
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