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mpra

This is the development version of mpra; for the stable release version, see mpra.

Analyze massively parallel reporter assays


Bioconductor version: Development (3.19)

Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).

Author: Leslie Myint [cre, aut], Kasper D. Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("mpra")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("mpra")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mpra")
mpra User's Guide HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews FunctionalGenomics, GeneRegulation, Sequencing, Software
Version 1.25.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), methods, BiocGenerics, SummarizedExperiment, limma
Imports S4Vectors, scales, stats, graphics, statmod
System Requirements
URL https://github.com/hansenlab/mpra
Bug Reports https://github.com/hansenlab/mpra/issues
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Suggests BiocStyle, knitr, rmarkdown, RUnit
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mpra_1.25.0.tar.gz
Windows Binary mpra_1.25.0.zip (64-bit only)
macOS Binary (x86_64) mpra_1.25.0.tgz
macOS Binary (arm64) mpra_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mpra
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mpra
Bioc Package Browser https://code.bioconductor.org/browse/mpra/
Package Short Url https://bioconductor.org/packages/mpra/
Package Downloads Report Download Stats