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riboSeqR

This is the development version of riboSeqR; for the stable release version, see riboSeqR.

Analysis of sequencing data from ribosome profiling experiments


Bioconductor version: Development (3.19)

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Author: Thomas J. Hardcastle [aut], Samuel Granjeaud [cre]

Maintainer: Samuel Granjeaud <samuel.granjeaud at inserm.fr>

Citation (from within R, enter citation("riboSeqR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("riboSeqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("riboSeqR")
riboSeqR PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Genetics, RiboSeq, Sequencing, Software, Visualization
Version 1.37.3
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.0.2), methods, GenomicRanges, abind
Imports Rsamtools, IRanges, S4Vectors, baySeq, GenomeInfoDb, seqLogo
System Requirements
URL https://github.com/samgg/riboSeqR
Bug Reports https://github.com/samgg/riboSeqR/issues
See More
Suggests BiocStyle, RUnit, BiocGenerics
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package riboSeqR_1.37.3.tar.gz
Windows Binary
macOS Binary (x86_64) riboSeqR_1.37.3.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/riboSeqR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/riboSeqR
Bioc Package Browser https://code.bioconductor.org/browse/riboSeqR/
Package Short Url https://bioconductor.org/packages/riboSeqR/
Package Downloads Report Download Stats