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ToxicoGx

This is the development version of ToxicoGx; for the stable release version, see ToxicoGx.

Analysis of Large-Scale Toxico-Genomic Data


Bioconductor version: Development (3.19)

Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.

Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("ToxicoGx")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ToxicoGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ToxicoGx")
ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Version 2.7.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License MIT + file LICENSE
Depends R (>= 4.1), CoreGx
Imports SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite
System Requirements
URL
See More
Suggests rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ToxicoGx_2.7.0.tar.gz
Windows Binary ToxicoGx_2.7.0.zip
macOS Binary (x86_64) ToxicoGx_2.7.0.tgz
macOS Binary (arm64) ToxicoGx_2.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ToxicoGx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ToxicoGx
Bioc Package Browser https://code.bioconductor.org/browse/ToxicoGx/
Package Short Url https://bioconductor.org/packages/ToxicoGx/
Package Downloads Report Download Stats