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This is the development version of SPLINTER; for the stable release version, see SPLINTER.

Splice Interpreter of Transcripts

Bioconductor version: Development (3.19)

Provides tools to analyze alternative splicing sites, interpret outcomes based on sequence information, select and design primers for site validiation and give visual representation of the event to guide downstream experiments.

Author: Diana Low [aut, cre]

Maintainer: Diana Low <lowdiana at>

Citation (from within R, enter citation("SPLINTER")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews AlternativeSplicing, GeneExpression, ImmunoOncology, RNASeq, Software, Visualization
Version 1.29.1
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-2
Depends R (>= 3.6.0), grDevices, stats
Imports graphics, ggplot2, seqLogo, Biostrings, biomaRt, GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz, IRanges, S4Vectors, GenomeInfoDb, utils, plyr, stringr, methods, BSgenome.Mmusculus.UCSC.mm9, googleVis
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Suggests txdbmaker, BiocStyle, knitr, rmarkdown
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