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This is the development version of pgxRpi; to use it, please install the devel version of Bioconductor.

R wrapper for Progenetix

Bioconductor version: Development (3.19)

The package is an R wrapper for Progenetix REST API built upon the Beacon v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data from Progenetix database—an open resource dedicated to curated oncogenomic profiles. Empowered by this package, users can effortlessly access and visualize data from Progenetix.

Author: Hangjia Zhao [aut, cre] , Michael Baudis [aut]

Maintainer: Hangjia Zhao <hangjia.zhao at>

Citation (from within R, enter citation("pgxRpi")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews CopyNumberVariation, DataImport, GenomicVariation, Software
Version 0.99.14
In Bioconductor since BioC 3.19 (R-4.4)
License Artistic-2.0
Depends R (>= 4.2)
Imports utils, methods, grDevices, graphics, circlize, httr, dplyr, attempt, lubridate, survival, survminer, ggplot2, plyr, GenomicRanges, SummarizedExperiment, S4Vectors
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Follow Installation instructions to use this package in your R session.

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