Implements a user-friendly interface for querying SQLite-based annotation data packages.
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biocViews |
Annotation, GenomeAnnotation, Microarray, Sequencing, Software |
Version |
1.61.0 |
In Bioconductor since |
BioC 2.1 (R-2.6) (15 years) |
License |
Artistic-2.0 |
Depends |
R (>= 2.7.0), methods, utils, stats4, BiocGenerics(>= 0.29.2), Biobase(>= 1.17.0), IRanges |
Imports |
DBI, RSQLite, S4Vectors(>= 0.9.25), stats, KEGGREST |
LinkingTo |
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Suggests |
hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db, RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75, BiocStyle, knitr |
SystemRequirements |
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Enhances |
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URL |
https://bioconductor.org/packages/AnnotationDbi |
BugReports |
https://github.com/Bioconductor/AnnotationDbi/issues |
Depends On Me |
annotate, AnnotationForge, ASpli, attract, Category, ChromHeatMap, customProDB, deco, DEXSeq, EGSEA, EpiTxDb, GenomicFeatures, goProfiles, GSReg, Guitar, ipdDb, maPredictDSC, MGFM, miRNAtap, OrganismDbi, pathRender, proBAMr, rnaseqGene, safe, SemDist, tinesath1probe, topGO |
Imports Me |
adSplit, affycoretools, affylmGUI, AllelicImbalance, annaffy, AnnotationHub, AnnotationHubData, annotatr, artMS, beadarray, bioCancer, BiocSet, biomaRt, BioNAR, BioNet, biovizBase, bumphunter, BUSpaRse, categoryCompare, ccmap, celldex, cellity, chimeraviz, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPseeker, clusterProfiler, CoCiteStats, Cogito, compEpiTools, consensusDE, crisprDesign, crisprseekplus, CrispRVariants, crossmeta, cTRAP, debrowser, derfinder, DeSousa2013, DominoEffect, DOSE, EasyCellType, EDASeq, eegc, EnrichmentBrowser, ensembldb, EpiMix, epimutacions, erma, esATAC, ExpHunterSuite, FRASER, GA4GHshiny, gage, GAPGOM, genefilter, geneplotter, GeneTonic, geneXtendeR, GenomicInteractionNodes, GenVisR, ggbio, GlobalAncova, globaltest, GmicR, GOfuncR, GOpro, GOSemSim, goseq, GOSim, goSTAG, GOstats, goTools, graphite, GSEABase, GSEABenchmarkeR, Gviz, gwascat, ideal, IMAS, InPAS, interactiveDisplay, IRISFGM, isomiRs, IVAS, karyoploteR, KEGGlincs, keggorthology, LRBaseDbi, lumi, mAPKL, MCbiclust, MeSHDbi, meshes, MesKit, MetaboSignal, methylGSA, methylumi, MIGSA, MineICA, MiRaGE, mirIntegrator, miRNAmeConverter, missMethyl, MLP, msigdb, MSnID, multiGSEA, multiMiR, NanoMethViz, NanoStringQCPro, nanotatoR, netOmics, NetSAM, netZooR, NoRCE, ORFik, Organism.dplyr, PADOG, pathview, pcaExplorer, phantasus, phenoTest, proActiv, psichomics, pwOmics, qpgraph, QuasR, rCGH, ReactomePA, REDseq, regutools, ReportingTools, restfulSE, rGREAT, rgsepd, ribosomeProfilingQC, RNAAgeCalc, rrvgo, rTRM, SBGNview, scanMiRApp, scPipe, scRNAseq, scruff, scTensor, SGSeq, signatureSearch, signifinder, simplifyEnrichment, SMITE, SpidermiR, StarBioTrek, SubCellBarCode, TCGAutils, tenXplore, TFutils, tigre, trackViewer, trena, TRESS, tricycle, txcutr, tximeta, Ularcirc, UniProt.ws, VariantAnnotation, VariantFiltering, ViSEAGO |
Suggests Me |
APAlyzer, ASURAT, autonomics, bambu, BiocGenerics, BiocOncoTK, BioPlex, BloodCancerMultiOmics2017, CellTrails, cicero, cola, csaw, curatedAdipoChIP, DAPAR, DEGreport, edgeR, eisaR, enrichplot, esetVis, FELLA, FGNet, fgsea, fishpond, GA4GHclient, gCrisprTools, GeneRegionScan, GenomicRanges, iSEEu, limma, miRLAB, MutationalPatterns, NetActivity, oligo, ontoProc, OUTRIDER, piano, Pigengene, plotgardener, pRoloc, ProteoDisco, quantiseqr, R3CPET, recount, RforProteomics, RLSeq, sigPathway, sparrow, SummarizedExperiment, systemPipeR, tidybulk, topconfects, weitrix, wiggleplotr |
Links To Me |
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Build Report |
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