DOI: 10.18129/B9.bioc.FELLA    

This is the development version of FELLA; for the stable release version, see FELLA.

Interpretation and enrichment for metabolomics data

Bioconductor version: Development (3.17)

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Author: Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut]

Maintainer: Sergio Picart-Armada <sergi.picart at upc.edu>

Citation (from within R, enter citation("FELLA")):


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biocViews GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software
Version 1.19.0
In Bioconductor since BioC 3.7 (R-3.5) (4.5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
Suggests shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim
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