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This is the development version of scPipe; for the stable release version, see scPipe.
Bioconductor version: Development (3.17)
A preprocessing pipeline for single cell RNA-seq/ATAC-seq data that starts from the fastq files and produces a feature count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.
Author: Luyi Tian [aut], Shian Su [aut], Shalin Naik [ctb], Shani Amarasinghe [aut], Oliver Voogd [aut], Phil Yang [aut, cre], Matthew Ritchie [ctb]
Maintainer: ERROR
Citation (from within R,
enter citation("scPipe")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("scPipe")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/scPipe |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scPipe |
Package Short Url | https://bioconductor.org/packages/scPipe/ |
Package Downloads Report | Download Stats |
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