DOI: 10.18129/B9.bioc.bumphunter  

Bump Hunter

Bioconductor version: Release (3.17)

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry [aut], Martin Aryee [aut], Kasper Daniel Hansen [aut], Hector Corrada Bravo [aut], Shan Andrews [ctb], Andrew E. Jaffe [ctb], Harris Jaffee [ctb], Leonardo Collado-Torres [ctb], Tamilselvi Guharaj [cre]

Maintainer: Tamilselvi Guharaj <selvi at ds.dfci.harvard.edu>

Citation (from within R, enter citation("bumphunter")):


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if (!require("BiocManager", quietly = TRUE))


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PDF R Script The bumphunter user's guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Epigenetics, ImmunoOncology, Infrastructure, MultipleComparison, Software
Version 1.42.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 3.5), S4Vectors(>= 0.9.25), IRanges(>= 2.3.23), GenomeInfoDb, GenomicRanges, foreach, iterators, methods, parallel, locfit
Imports matrixStats, limma, doRNG, BiocGenerics, utils, GenomicFeatures, AnnotationDbi, stats
Suggests testthat, RUnit, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
URL https://github.com/rafalab/bumphunter
Depends On Me minfi
Imports Me brainflowprobes, ChAMP, coMethDMR, DAMEfinder, derfinder, dmrseq, epimutacions, epivizr, GenomicState, methylCC, recountWorkflow, rnaEditr
Suggests Me bigmelon, derfinderPlot, epivizrData, regionReport
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bumphunter_1.42.0.tar.gz
Windows Binary bumphunter_1.42.0.zip
macOS Binary (x86_64) bumphunter_1.42.0.tgz
macOS Binary (arm64) bumphunter_1.42.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bumphunter
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bumphunter
Bioc Package Browser https://code.bioconductor.org/browse/bumphunter/
Package Short Url https://bioconductor.org/packages/bumphunter/
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Old Source Packages for BioC 3.17 Source Archive

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