UniProt.ws

DOI: 10.18129/B9.bioc.UniProt.ws    

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: Development (3.17)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

 

PDF	R Script	UniProt.ws: A package for retrieving data from the UniProt web service
PDF		Reference Manual

Details

biocViews	Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version	2.39.0
In Bioconductor since	BioC 2.12 (R-3.0) (9.5 years)
License	Artistic License 2.0
Depends	methods, utils, RSQLite, BiocGenerics(>= 0.13.8)
Imports	AnnotationDbi, BiocFileCache, BiocBaseUtils, rjsoncons, jsonlite, httr, httpcache, progress
LinkingTo
Suggests	RUnit, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	dagLogo, drugTargetInteractions
Suggests Me	cleaver, qPLEXanalyzer
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	UniProt.ws_2.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/UniProt.ws
Package Short Url	https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report	Download Stats