UniProt.ws

DOI: 10.18129/B9.bioc.UniProt.ws    

This is the development version of UniProt.ws; for the stable release version, see UniProt.ws.

R Interface to UniProt Web Services

Bioconductor version: Development (3.17)

The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. This package provides a collection of functions for retrieving, processing, and re-packaging UniProt web services. The package makes use of UniProt's modernized REST API and allows mapping of identifiers accross different databases.

Author: Marc Carlson [aut], Csaba Ortutay [ctb], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Citation (from within R, enter citation("UniProt.ws")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("UniProt.ws")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UniProt.ws")

 

PDF R Script UniProt.ws: A package for retrieving data from the UniProt web service
PDF   Reference Manual

Details

biocViews Annotation, BioCarta, GO, Infrastructure, KEGG, Software
Version 2.39.0
In Bioconductor since BioC 2.12 (R-3.0) (9.5 years)
License Artistic License 2.0
Depends methods, utils, RSQLite, BiocGenerics(>= 0.13.8)
Imports AnnotationDbi, BiocFileCache, BiocBaseUtils, rjsoncons, jsonlite, httr, httpcache, progress
LinkingTo
Suggests RUnit, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me dagLogo, drugTargetInteractions
Suggests Me cleaver, qPLEXanalyzer
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UniProt.ws_2.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/UniProt.ws
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UniProt.ws
Package Short Url https://bioconductor.org/packages/UniProt.ws/
Package Downloads Report Download Stats

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