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This is the development version of Ularcirc; for the stable release version, see Ularcirc.
Bioconductor version: Development (3.17)
Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.
Author: David Humphreys [aut, cre]
Maintainer: David Humphreys <d.humphreys at victorchang.edu.au>
Citation (from within R,
enter citation("Ularcirc")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("Ularcirc")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | AlternativeSplicing, Annotation, Coverage, DataRepresentation, DifferentialSplicing, Genetics, Sequencing, Software, Visualization |
Version | 1.17.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (4 years) |
License | file LICENSE |
Depends | R (>= 3.4.0) |
Imports | AnnotationHub, AnnotationDbi, BiocGenerics, Biostrings, BSgenome, data.table (>= 1.9.4), DT, GenomicFeatures, GenomeInfoDb, GenomeInfoDbData, GenomicAlignments, GenomicRanges, ggplot2, ggrepel, gsubfn, mirbase.db, moments, Organism.dplyr, plotgardener, R.utils, S4Vectors, shiny, shinydashboard, shinyFiles, shinyjs, yaml |
LinkingTo | |
Suggests | BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr, org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
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Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/Ularcirc |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Ularcirc |
Package Short Url | https://bioconductor.org/packages/Ularcirc/ |
Package Downloads Report | Download Stats |
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