GOpro

DOI: 10.18129/B9.bioc.GOpro    

This is the development version of GOpro; for the stable release version, see GOpro.

Find the most characteristic gene ontology terms for groups of human genes

Bioconductor version: Development (3.17)

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Author: Lidia Chrabaszcz

Maintainer: Lidia Chrabaszcz <chrabaszcz.lidia at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GOpro")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOpro")

 

HTML	R Script	GOpro: Determine groups of genes and find their characteristic GO term
PDF		Reference Manual

Details

biocViews	Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, MultipleComparison, Software
Version	1.25.0
In Bioconductor since	BioC 3.4 (R-3.3) (6 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	AnnotationDbi, dendextend, doParallel, foreach, parallel, org.Hs.eg.db, GO.db, Rcpp, stats, graphics, MultiAssayExperiment, IRanges, S4Vectors
LinkingTo	Rcpp, BH
Suggests	knitr, rmarkdown, RTCGA.PANCAN12, BiocStyle, testthat
SystemRequirements
Enhances
URL	https://github.com/mi2-warsaw/GOpro
BugReports	https://github.com/mi2-warsaw/GOpro/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOpro_1.25.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/GOpro
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOpro
Package Short Url	https://bioconductor.org/packages/GOpro/
Package Downloads Report	Download Stats