DOI: 10.18129/B9.bioc.rgsepd    

This is the development version of rgsepd; for the stable release version, see rgsepd.

Gene Set Enrichment / Projection Displays

Bioconductor version: Development (3.17)

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Author: Karl Stamm

Maintainer: Karl Stamm <karl.stamm at gmail.com>

Citation (from within R, enter citation("rgsepd")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script An Introduction to the rgsepd package
PDF   Reference Manual


biocViews DifferentialExpression, GeneSetEnrichment, ImmunoOncology, RNASeq, Software
Version 1.31.0
In Bioconductor since BioC 3.1 (R-3.2) (7.5 years)
License GPL-3
Depends R (>= 4.2.0), DESeq2, goseq(>= 1.28)
Imports gplots, biomaRt, org.Hs.eg.db, GO.db, SummarizedExperiment, AnnotationDbi
Suggests boot, tools, BiocGenerics, knitr, xtable
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rgsepd_1.31.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/rgsepd
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rgsepd
Package Short Url https://bioconductor.org/packages/rgsepd/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: