bioCancer

DOI: 10.18129/B9.bioc.bioCancer    

This is the development version of bioCancer; for the stable release version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

Bioconductor version: Development (3.17)

bioCancer is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")

 

HTML	R Script	bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis
PDF		Reference Manual

Details

biocViews	DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization
Version	1.27.0
In Bioconductor since	BioC 3.4 (R-3.3) (6 years)
License	AGPL-3 | file LICENSE
Depends	R (>= 3.6.0), radiant.data (>= 0.9.1), XML (>= 3.98)
Imports	R.oo, R.methodsS3, httr, DT (>= 0.3), dplyr (>= 0.7.2), shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db
LinkingTo
Suggests	BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)
SystemRequirements
Enhances
URL	http://kmezhoud.github.io/bioCancer
BugReports	https://github.com/kmezhoud/bioCancer/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bioCancer_1.27.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/bioCancer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bioCancer
Package Short Url	https://bioconductor.org/packages/bioCancer/
Package Downloads Report	Download Stats