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This page was generated on 2024-02-28 11:38:47 -0500 (Wed, 28 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4671
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4411
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4438
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4414
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 502/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DAPAR 1.35.1  (landing page)
Samuel Wieczorek
Snapshot Date: 2024-02-26 14:39:26 -0500 (Mon, 26 Feb 2024)
git_url: https://git.bioconductor.org/packages/DAPAR
git_branch: devel
git_last_commit: c972945
git_last_commit_date: 2024-02-08 08:45:30 -0500 (Thu, 08 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  ERROR    OK    ERROR    ERROR  
merida1macOS 12.7.1 Monterey / x86_64  ERROR    OK    ERROR    ERROR  
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  ERROR    OK    ERROR  

CHECK results for DAPAR on merida1


To the developers/maintainers of the DAPAR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DAPAR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DAPAR
Version: 1.35.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DAPAR_1.35.1.tar.gz
StartedAt: 2024-02-27 04:31:11 -0500 (Tue, 27 Feb 2024)
EndedAt: 2024-02-27 04:31:16 -0500 (Tue, 27 Feb 2024)
EllapsedTime: 5.2 seconds
RetCode: 1
Status:   ERROR  
CheckDir: DAPAR.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DAPAR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DAPAR_1.35.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPAR’ version ‘1.35.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPAR’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/DAPAR.Rcheck/00check.log’
for details.


Installation output

DAPAR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DAPAR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘DAPAR’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in '/Users/biocbuild/bbs-3.19-bioc/meat/DAPAR/R' missing from 'Collate' field:
  limmaAnalysis2.R
ERROR: unable to collate and parse R files for package ‘DAPAR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/DAPAR’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/DAPAR’

Tests output


Example timings