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This page was generated on 2024-05-06 11:37:13 -0400 (Mon, 06 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4661
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4392
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4423
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1573/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
psichomics 1.31.0  (landing page)
Nuno Saraiva-Agostinho
Snapshot Date: 2024-05-03 14:05:06 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/psichomics
git_branch: devel
git_last_commit: 1be6848
git_last_commit_date: 2024-04-30 10:54:27 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'recount' which is not available
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'recount' which is not available
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for psichomics on palomino4


To the developers/maintainers of the psichomics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/psichomics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: psichomics
Version: 1.31.0
Command: chmod a+r psichomics -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data psichomics
StartedAt: 2024-05-03 22:17:59 -0400 (Fri, 03 May 2024)
EndedAt: 2024-05-03 22:20:24 -0400 (Fri, 03 May 2024)
EllapsedTime: 145.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r psichomics -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data psichomics
###
##############################################################################
##############################################################################


* checking for file 'psichomics/DESCRIPTION' ... OK
* preparing 'psichomics':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'AS_events_preparation.Rmd' using rmarkdown
--- finished re-building 'AS_events_preparation.Rmd'

--- re-building 'CLI_tutorial.Rmd' using rmarkdown

Quitting from lines  at lines 159-162 [quantify options] (CLI_tutorial.Rmd)
Error: processing vignette 'CLI_tutorial.Rmd' failed with diagnostics:
Corrupt Cache: index file
  See  AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache
  cache: F:\biocbuild\AnnotationHub_cache
  filename: annotationhub.index.rds
--- failed re-building 'CLI_tutorial.Rmd'

--- re-building 'GUI_tutorial.Rmd' using rmarkdown
--- finished re-building 'GUI_tutorial.Rmd'

--- re-building 'custom_data.Rmd' using rmarkdown
--- finished re-building 'custom_data.Rmd'

SUMMARY: processing the following file failed:
  'CLI_tutorial.Rmd'

Error: Vignette re-building failed.
Execution halted