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This page was generated on 2024-07-16 11:44 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 199/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: c3d59a4
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

CHECK results for biodbHmdb on palomino8

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.11.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
StartedAt: 2024-07-15 22:17:26 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 22:18:50 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 83.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-15 22:18:28.744][biodb::testContext]
biodb.INFO [2024-07-15 22:18:28.747][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:28.748][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-15 22:18:28.750][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:28.751][biodb::testContext]
biodb.INFO [2024-07-15 22:18:28.753][biodb::testThat]
biodb.INFO [2024-07-15 22:18:28.754][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-15 22:18:28.755][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:28.756][biodb::testThat]
biodb.INFO [2024-07-15 22:18:28.905][biodb::testContext]
biodb.INFO [2024-07-15 22:18:28.907][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:28.908][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-15 22:18:28.909][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:28.910][biodb::testContext]
biodb.INFO [2024-07-15 22:18:28.920][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:28.929][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:28.937][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:28.938][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:18:28.940][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:18:28.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.945][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:18:28.961][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:18:28.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.966][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:18:28.968][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:18:28.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.972][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:18:28.973][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:18:28.975][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:18:28.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.979][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:18:28.980][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:18:28.981][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:18:28.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.986][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:18:28.987][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:18:28.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.992][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:18:28.993][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:18:28.994][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:18:28.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:28.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:28.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:28.999][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:18:29.000][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:18:29.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.005][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:18:29.006][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:18:29.007][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:18:29.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.012][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:29.013][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:18:29.014][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:18:29.015][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:18:29.016][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:18:29.018][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:18:29.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.022][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:18:29.024][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:18:29.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.030][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:18:29.033][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:18:29.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.040][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:18:29.041][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:18:29.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.046][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:18:29.047][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:18:29.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.052][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:18:29.053][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:18:29.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.058][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:29.059][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:18:29.062][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:18:29.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.067][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:18:29.068][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:18:29.069][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:18:29.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.076][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:18:29.117][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.142][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:18:29.144][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.155][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:29.157][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.162][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.166][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:29.168][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:29.169][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.171][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:18:29.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:29.175][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.177][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.179][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:29.179][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:29.179][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:29.179][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:29.179][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:29.181][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:29.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.186][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:29.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.194][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.196][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.198][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.199][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.201][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.204][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:18:29.207][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.209][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:29.211][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.213][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:29.215][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.216][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.217][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.219][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.220][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:29.221][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:29.222][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.223][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:18:29.225][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:29.226][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.227][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.228][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:29.228][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:29.228][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:29.228][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:29.228][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:29.229][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:29.231][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.233][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:29.234][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.235][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.238][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.239][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.240][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.241][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.243][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.244][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:18:29.246][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.247][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:18:29.248][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.249][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:29.251][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.252][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.253][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.254][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.255][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:29.257][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:29.258][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.259][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:18:29.260][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:29.261][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.263][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.264][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.265][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:29.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.267][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.268][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:29.270][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.271][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.272][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.273][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.274][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.275][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.277][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.278][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.279][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:18:29.281][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.282][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:29.283][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.285][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:29.286][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.287][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.288][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.291][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:29.292][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:29.293][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.294][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:18:29.295][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:29.297][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.298][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.299][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.300][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:29.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:29.305][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.307][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.308][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.309][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.310][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.311][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.313][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.316][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:29.317][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.427][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:18:29.433][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:18:29.435][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:18:29.437][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:18:29.439][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:18:29.440][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:29.442][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:29.444][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:29.445][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:18:29.447][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:29.448][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:29.450][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:18:29.451][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:29.453][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:29.454][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:18:29.456][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:29.457][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:18:29.459][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:18:29.461][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:18:29.462][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:18:29.464][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:18:29.466][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:18:29.467][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:18:29.469][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:18:29.470][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:18:29.472][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:18:29.473][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:18:29.475][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:18:29.476][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:18:29.478][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:18:29.480][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:18:29.482][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:18:29.484][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:18:29.486][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:18:29.487][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:18:29.489][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:18:29.491][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:18:29.492][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:18:29.494][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:18:29.496][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:18:29.497][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:18:29.499][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:18:29.501][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:18:29.502][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:18:29.504][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:18:29.506][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:18:29.507][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:18:29.509][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:18:29.510][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:18:29.512][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:18:29.514][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:18:29.515][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:18:29.517][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:18:29.518][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:18:29.520][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:18:29.522][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:18:29.523][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:18:29.525][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:18:29.528][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:18:29.530][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:18:29.533][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:18:29.534][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:18:29.536][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:18:29.537][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:18:29.539][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:18:29.540][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:18:29.542][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:18:29.544][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:18:29.545][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:18:29.547][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:18:29.548][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:18:29.550][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:18:29.551][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:18:29.553][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:18:29.555][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:18:29.556][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:18:29.559][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:18:29.562][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:18:29.564][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:18:29.567][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:18:29.570][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:18:29.572][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:18:29.575][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:18:29.617][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:18:29.620][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:29.623][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:29.624][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.628][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:29.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:29.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:29.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:29.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:29.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:29.808][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:29.817][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:29.820][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.821][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.823][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.824][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:29.825][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.826][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:18:29.828][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.829][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.830][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:18:29.831][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:29.833][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.834][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:18:29.835][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:18:29.836][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:18:29.838][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:29.839][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:29.839][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:18:29.839][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:18:29.841][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:18:29.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.843][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.844][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:29.845][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:29.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:29.848][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:29.849][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:29.849][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:18:29.850][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.851][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.852][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:29.854][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:29.859][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:18:29.861][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:29.863][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:29.865][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:29.866][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:29.889][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:29.891][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:18:29.902][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:29.907][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:29.911][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:29.913][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:29.914][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:18:29.916][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:18:29.917][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:29.917][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:18:29.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:29.920][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:29.921][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:18:29.922][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:18:29.923][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:29.939][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:29.941][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:29.942][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:29.944][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:29.945][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:29.946][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:18:29.956][biodb::testThat]
biodb.INFO [2024-07-15 22:18:29.957][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-15 22:18:29.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:29.960][biodb::testThat]
biodb.TRACE[2024-07-15 22:18:29.971][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-15 22:18:29.974][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:29.977][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:29.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:29.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:29.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:30.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:30.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:30.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:30.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:30.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.154][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.171][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.173][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.204][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.205][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.209][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.214][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.215][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.219][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.236][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.243][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.245][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.247][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.257][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.274][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.276][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.285][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.286][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.295][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:30.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:30.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.299][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:30.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:30.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:30.307][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:30.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.316][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.326][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.331][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.344][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.351][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:30.352][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:30.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:30.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.372][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:30.373][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:30.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:30.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:30.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:30.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.716][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:30.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:30.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:30.878][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:18:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:30.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.981][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:30.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:30.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:30.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:30.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:30.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:31.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.134][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.136][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.185][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.187][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:31.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.336][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:31.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.391][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.427][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.428][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:31.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:31.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.511][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.512][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.514][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.559][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.593][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.595][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.597][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.634][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.681][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.682][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.724][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:31.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:31.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:31.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:31.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:31.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:31.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.774][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.806][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.842][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.857][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.858][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.861][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.863][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:31.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:31.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.889][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.890][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:31.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.900][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.902][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:31.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.928][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.929][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:31.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.946][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.947][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:31.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.957][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.958][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:31.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.973][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.974][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:31.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:31.994][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:31.996][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:31.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:31.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.006][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.029][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.173][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.175][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.177][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.199][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.203][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:32.223][biodb::testThat]
biodb.INFO [2024-07-15 22:18:32.225][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-15 22:18:32.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:32.227][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:32.240][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-15 22:18:32.247][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:32.269][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:32.271][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:32.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:18:32.276][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:18:32.295][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-15 22:18:32.296][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:32.323][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:32.325][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:32.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:32.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:32.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:32.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:32.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:32.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:32.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:32.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:32.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:32.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:32.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.361][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.362][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.372][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.374][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.378][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.387][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.389][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.391][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.408][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.409][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.426][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.439][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.448][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.450][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.454][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.475][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.490][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.512][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.519][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.527][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.534][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:32.535][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:32.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.539][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:32.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.548][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.555][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:32.556][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.560][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:32.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.586][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:32.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:32.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:32.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.934][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.975][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:32.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:32.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:33.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:33.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:33.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.126][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:18:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-15 22:18:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-15 22:18:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-15 22:18:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-15 22:18:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-15 22:18:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-15 22:18:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:33.166][biodb::testThat]
biodb.INFO [2024-07-15 22:18:33.167][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-15 22:18:33.169][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:33.170][biodb::testThat]
biodb.TRACE[2024-07-15 22:18:33.174][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.177][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.179][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-15 22:18:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.233][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-15 22:18:33.234][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-15 22:18:33.236][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:18:33.237][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:18:33.239][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.241][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.243][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:33.244][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.246][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:33.247][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:33.249][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:33.250][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:33.251][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:33.253][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:33.254][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.276][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:33.277][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:33.278][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:18:33.310][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.312][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.314][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.316][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-15 22:18:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.356][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-15 22:18:33.421][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:18:33.423][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-15 22:18:33.425][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-15 22:18:33.439][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.441][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.443][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:33.445][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.446][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:33.460][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:33.462][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:33.463][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:33.465][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:33.466][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:33.467][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.495][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:33.496][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:33.497][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:18:33.626][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.627][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.630][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.631][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-15 22:18:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.681][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.689][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-15 22:18:33.691][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-15 22:18:33.692][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-15 22:18:33.693][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-15 22:18:33.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.702][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.704][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:33.706][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.707][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:33.709][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:33.710][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:33.711][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:33.713][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:33.714][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:33.716][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:33.719][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.729][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.734][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.739][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:33.740][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:33.741][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-15 22:18:33.789][biodb::testThat]
biodb.INFO [2024-07-15 22:18:33.791][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-15 22:18:33.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:33.793][biodb::testThat]
biodb.TRACE[2024-07-15 22:18:33.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.900][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-15 22:18:33.901][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:18:33.902][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:18:33.905][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.907][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.909][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:33.910][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:33.912][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:33.913][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:33.915][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:33.916][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:33.917][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:33.919][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:33.920][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:33.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:33.942][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:33.943][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-15 22:18:34.003][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.005][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-15 22:18:34.007][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:34.009][biodb::testThat]
biodb.TRACE[2024-07-15 22:18:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:34.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:34.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:18:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:18:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:34.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:34.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:18:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:34.135][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.137][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-15 22:18:34.139][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:34.141][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.162][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.164][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-15 22:18:34.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:34.166][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.182][biodb::testThat]
biodb.INFO [2024-07-15 22:18:34.183][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-15 22:18:34.185][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:34.186][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:34.196][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-15 22:18:34.920][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-15 22:18:37.222][biodb::testThat]
biodb.INFO [2024-07-15 22:18:37.223][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-15 22:18:37.224][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:37.226][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:37.398][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-15 22:18:39.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:39.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.196][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:39.198][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:39.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.201][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:39.203][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:39.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.205][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:39.207][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.208][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-15 22:18:39.210][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:39.211][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:39.213][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-15 22:18:39.255][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:39.257][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.259][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:39.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-15 22:18:39.311][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-15 22:18:39.313][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-15 22:18:39.314][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:39.316][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.318][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:39.319][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:39.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:39.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:39.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:39.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:39.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:39.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.345][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:39.380][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-15 22:18:39.381][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-15 22:18:39.416][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.417][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-15 22:18:39.419][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:39.420][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:39.435][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-15 22:18:39.438][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-15 22:18:39.440][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:39.444][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.446][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:39.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-15 22:18:39.450][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-15 22:18:39.452][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-15 22:18:39.453][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:39.455][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.456][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:39.458][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:39.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:39.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:39.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:39.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:39.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:39.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:39.526][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-15 22:18:39.527][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-15 22:18:39.529][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-15 22:18:39.559][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.561][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-15 22:18:39.562][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:39.563][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.610][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.611][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-15 22:18:39.613][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:39.614][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:39.617][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.619][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.622][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:39.623][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.625][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:39.626][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:39.628][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:39.629][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:39.631][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-15 22:18:39.655][biodb::testThat]
biodb.INFO [2024-07-15 22:18:39.657][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-15 22:18:39.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:39.659][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:39.663][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.665][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.667][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:39.669][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:39.670][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:39.672][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:39.680][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:39.682][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:39.685][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-15 22:18:39.707][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:39.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.713][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:39.714][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:39.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:39.718][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:39.719][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:39.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:39.722][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:39.723][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:18:39.725][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:18:39.733][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:18:39.734][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:18:39.736][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:39.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:39.738][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:39.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:39.741][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:18:39.748][biodb::testContext]
biodb.INFO [2024-07-15 22:18:39.749][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:39.750][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-15 22:18:39.752][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:39.753][biodb::testContext]
biodb.INFO [2024-07-15 22:18:39.760][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:39.762][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:39.768][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:39.770][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:18:39.771][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.776][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:18:39.777][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.782][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:18:39.784][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.789][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:18:39.790][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:18:39.791][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:18:39.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.796][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:18:39.798][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:18:39.799][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.804][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:18:39.805][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:18:39.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.810][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:18:39.811][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:18:39.813][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:18:39.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.818][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:18:39.819][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.824][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:18:39.825][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:18:39.827][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:18:39.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.832][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:39.833][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:18:39.834][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:18:39.836][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:18:39.843][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:18:39.845][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:18:39.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.850][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:18:39.851][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:18:39.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.857][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:18:39.858][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:18:39.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.863][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:18:39.864][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:18:39.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.869][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:18:39.871][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:18:39.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.876][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:18:39.877][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:18:39.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.882][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:39.883][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:18:39.887][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:18:39.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.892][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:18:39.893][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:18:39.895][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:18:39.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:39.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:39.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:39.900][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:18:39.902][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.903][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:18:39.905][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.906][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:39.907][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.908][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.910][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.911][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.912][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:39.914][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:39.915][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.916][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:18:39.918][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:39.919][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.920][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.922][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:39.922][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:39.922][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:39.922][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:39.922][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:39.923][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:39.924][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:39.925][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:39.927][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:39.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:39.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:39.930][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.932][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.933][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:39.934][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:39.935][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.937][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.938][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:18:39.940][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.942][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:39.943][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.944][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:39.946][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.947][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.948][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.950][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.951][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:39.952][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:39.954][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.955][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:18:39.956][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:39.958][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.959][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.960][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:39.960][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:39.960][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:39.960][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:39.960][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:39.962][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:39.963][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:39.964][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:39.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:39.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:39.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:39.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.971][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.972][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:39.973][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:39.975][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.976][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:39.979][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:18:39.981][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.982][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:18:39.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.991][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:39.992][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:39.994][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.995][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:39.996][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:39.998][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:39.999][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:40.000][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.002][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:18:40.003][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:40.004][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.006][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.007][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.008][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:40.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.012][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:40.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.016][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.017][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.019][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:40.020][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:40.021][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.022][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.024][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:18:40.026][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.028][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:40.029][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.030][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:40.031][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.033][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.034][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.035][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.037][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:40.038][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:40.039][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.041][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:18:40.042][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:40.043][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.045][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.046][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.047][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:40.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.051][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:40.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.056][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.058][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:40.059][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:40.060][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.061][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.063][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:40.064][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.184][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:18:40.187][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:18:40.190][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:18:40.193][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:18:40.196][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:18:40.199][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:40.202][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:40.205][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:40.207][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:18:40.210][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:40.213][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:40.216][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:18:40.218][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:40.220][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:40.222][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:18:40.224][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:40.225][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:18:40.227][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:18:40.229][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:18:40.231][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:18:40.232][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:18:40.234][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:18:40.236][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:18:40.237][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:18:40.239][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:18:40.241][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:18:40.243][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:18:40.244][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:18:40.246][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:18:40.248][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:18:40.250][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:18:40.251][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:18:40.253][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:18:40.255][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:18:40.257][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:18:40.258][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:18:40.261][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:18:40.263][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:18:40.266][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:18:40.268][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:18:40.271][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:18:40.274][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:18:40.276][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:18:40.279][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:18:40.282][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:18:40.285][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:18:40.287][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:18:40.290][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:18:40.302][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:18:40.305][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:18:40.308][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:18:40.311][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:18:40.314][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:18:40.316][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:18:40.319][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:18:40.322][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:18:40.324][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:18:40.327][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:18:40.330][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:18:40.333][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:18:40.335][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:18:40.338][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:18:40.341][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:18:40.343][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:18:40.346][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:18:40.349][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:18:40.352][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:18:40.354][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:18:40.357][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:18:40.360][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:18:40.362][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:18:40.365][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:18:40.368][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:18:40.370][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:18:40.373][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:18:40.376][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:18:40.378][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:18:40.380][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:18:40.381][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:18:40.383][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:18:40.385][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:18:40.386][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:18:40.388][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:18:40.389][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:18:40.392][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:40.393][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:40.394][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.396][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:40.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:40.557][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:40.559][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:40.561][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.563][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.565][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:40.566][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.568][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:18:40.569][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.570][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.572][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:18:40.573][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:40.574][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.576][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:18:40.577][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:18:40.578][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:18:40.580][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:40.581][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:40.581][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:18:40.581][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:18:40.582][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:18:40.583][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.585][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.586][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:40.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:40.588][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:40.589][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:40.591][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:40.591][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:18:40.592][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:40.593][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:40.595][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:40.597][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:40.600][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:18:40.603][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:40.606][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:40.615][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:40.618][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:40.621][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:40.623][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:18:40.624][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:40.626][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:40.628][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:40.629][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:40.631][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:18:40.632][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:18:40.633][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:40.633][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:18:40.634][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:40.636][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:40.637][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:18:40.638][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:18:40.639][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:40.641][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:40.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:40.644][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:40.646][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:40.647][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:40.648][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:18:40.650][biodb::testThat]
biodb.INFO [2024-07-15 22:18:40.652][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-15 22:18:40.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:40.654][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:40.660][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:40.662][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:40.664][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:40.666][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:40.667][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:40.668][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:40.670][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:40.671][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:40.672][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:40.676][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-15 22:18:40.688][biodb::testThat]
biodb.INFO [2024-07-15 22:18:40.689][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-15 22:18:40.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:40.692][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:40.694][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-15 22:18:40.695][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:40.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:40.699][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:40.702][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-15 22:18:40.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:18:40.717][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-15 22:18:40.719][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:40.721][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:40.722][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:40.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:40.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:40.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:40.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:40.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:40.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:40.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:40.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:40.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.804][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:40.805][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:40.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.814][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:40.816][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:40.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.818][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.831][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:40.832][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:40.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:40.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:40.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:40.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.852][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:40.853][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:40.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:40.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:40.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.866][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:40.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:40.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:40.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:40.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:40.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:40.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:40.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:40.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.905][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:40.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:40.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:40.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:40.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.925][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:40.927][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:40.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:40.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:40.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.946][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:40.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:40.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.956][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:40.958][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:40.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.966][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:40.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:40.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.983][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:40.985][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:40.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:41.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:41.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:41.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:41.501][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-15 22:18:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:18:41.525][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:18:41.527][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:18:41.528][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:18:41.530][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:18:41.531][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:41.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:41.533][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.535][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:18:41.542][biodb::testContext]
biodb.INFO [2024-07-15 22:18:41.543][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:41.544][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-15 22:18:41.545][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:18:41.546][biodb::testContext]
biodb.INFO [2024-07-15 22:18:41.553][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:41.555][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:41.561][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:41.562][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:18:41.563][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.568][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:18:41.569][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.574][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:18:41.575][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.579][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:18:41.581][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:18:41.582][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:18:41.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.587][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:18:41.588][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:18:41.589][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.594][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:18:41.595][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:18:41.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.599][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:18:41.601][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:18:41.602][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:18:41.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.607][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:18:41.608][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.612][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:18:41.614][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:18:41.621][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:18:41.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.626][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:41.627][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:18:41.628][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:18:41.629][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:18:41.631][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:18:41.632][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:18:41.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.636][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:18:41.638][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:18:41.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.642][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:18:41.644][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:18:41.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.648][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:18:41.650][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:18:41.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.654][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:18:41.656][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:18:41.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.660][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:18:41.661][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:18:41.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.666][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:18:41.667][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:18:41.671][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:18:41.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.675][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:18:41.676][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:18:41.678][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:18:41.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.683][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:18:41.685][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.686][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:18:41.688][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:41.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.693][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.694][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.695][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:41.696][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:41.698][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.699][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:18:41.700][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:41.701][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.702][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.704][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:41.704][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:41.704][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:41.704][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:41.704][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:41.705][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:41.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.709][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:41.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.711][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.713][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.715][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.716][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:41.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:41.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.722][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.724][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:18:41.728][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.730][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:41.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:41.735][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.737][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.739][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.743][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:41.745][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:41.747][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.749][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:18:41.750][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:41.751][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.753][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.754][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:41.754][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:18:41.754][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:18:41.754][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:18:41.754][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:18:41.755][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:41.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:41.765][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.768][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.769][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.770][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:41.772][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:41.773][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.774][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.775][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:18:41.777][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.779][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:18:41.780][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.781][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:41.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.785][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.786][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.787][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:18:41.789][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:41.790][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.791][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:18:41.793][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:41.794][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.795][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.796][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.798][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:41.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.801][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:41.803][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.804][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.805][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.806][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.807][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:41.809][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:41.810][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.811][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.812][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:18:41.814][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.816][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:18:41.817][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.818][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:41.819][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.821][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.822][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.823][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.824][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:18:41.826][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:41.827][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.828][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:18:41.829][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:41.831][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.832][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:41.833][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.834][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:18:41.836][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.837][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.838][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:41.839][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:41.840][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:41.842][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:41.843][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.844][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:41.845][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:41.847][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:41.848][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:41.850][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:41.851][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:41.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:41.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:41.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:41.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:41.956][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:18:41.959][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:18:41.961][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:18:41.964][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:18:41.966][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:18:41.968][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:41.969][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:41.971][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:41.973][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:18:41.974][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:41.976][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:41.977][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:18:41.979][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:18:41.981][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:18:41.982][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:18:41.984][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:41.985][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:18:41.987][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:18:41.989][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:18:41.990][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:18:41.992][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:18:41.994][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:18:41.995][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:18:41.997][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:18:41.998][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:18:42.000][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:18:42.002][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:18:42.003][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:18:42.005][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:18:42.006][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:18:42.008][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:18:42.010][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:18:42.011][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:18:42.013][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:18:42.020][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:18:42.022][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:18:42.024][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:18:42.026][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:18:42.027][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:18:42.029][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:18:42.030][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:18:42.032][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:18:42.034][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:18:42.035][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:18:42.037][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:18:42.039][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:18:42.040][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:18:42.042][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:18:42.044][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:18:42.045][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:18:42.047][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:18:42.048][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:18:42.050][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:18:42.052][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:18:42.053][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:18:42.055][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:18:42.056][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:18:42.058][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:18:42.060][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:18:42.062][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:18:42.063][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:18:42.065][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:18:42.066][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:18:42.068][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:18:42.070][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:18:42.072][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:18:42.075][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:18:42.078][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:18:42.080][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:18:42.083][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:18:42.086][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:18:42.088][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:18:42.091][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:18:42.093][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:18:42.095][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:18:42.097][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:18:42.098][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:18:42.100][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:18:42.102][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:18:42.104][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:18:42.105][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:18:42.107][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:18:42.108][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:18:42.110][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:18:42.113][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:18:42.114][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:18:42.115][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.117][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:18:42.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:42.266][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:18:42.268][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:42.270][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:42.271][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:18:42.273][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:42.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:18:42.275][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:42.282][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:18:42.284][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:42.285][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:18:42.287][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:18:42.288][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:18:42.289][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:42.291][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:18:42.293][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:18:42.295][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:18:42.297][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:18:42.299][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:18:42.299][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:18:42.299][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:18:42.301][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:18:42.303][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:42.305][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:42.307][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:18:42.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:18:42.311][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:18:42.313][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:18:42.315][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:42.315][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:18:42.317][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:42.319][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:42.321][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:18:42.323][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:18:42.325][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:18:42.328][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:18:42.331][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:18:42.334][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:18:42.337][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:18:42.343][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:42.345][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:18:42.347][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:42.351][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:42.353][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:42.355][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:42.358][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:18:42.360][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:18:42.362][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:18:42.362][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:18:42.364][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:18:42.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:18:42.368][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:18:42.369][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:18:42.371][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:18:42.374][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:42.376][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:42.378][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:42.381][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:18:42.383][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:18:42.385][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:18:42.387][biodb::testThat]
biodb.INFO [2024-07-15 22:18:42.388][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-15 22:18:42.390][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:18:42.391][biodb::testThat]
biodb.DEBUG[2024-07-15 22:18:42.393][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:18:42.395][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-15 22:18:42.397][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-15 22:18:42.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:42.407][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:42.409][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:42.412][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:42.414][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:42.416][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:42.418][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:42.420][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:42.421][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:42.423][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:42.424][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-15 22:18:42.426][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-15 22:18:42.427][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:42.430][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:42.431][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:42.434][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:18:42.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:18:42.439][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-15 22:18:42.441][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:42.442][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:42.444][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:42.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:42.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:42.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:42.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:42.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:42.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:42.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:42.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:42.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.484][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.486][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.488][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.495][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.496][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.506][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.507][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.520][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.527][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.528][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.539][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.541][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.559][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.573][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:42.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:42.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:42.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.594][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.634][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:42.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:42.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.644][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:42.645][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.648][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:42.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.665][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:42.666][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:42.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:42.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:42.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:42.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:42.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.923][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.962][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:42.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:42.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:43.098][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:18:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:43.131][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:43.133][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:43.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:43.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:43.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:43.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:43.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:43.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:43.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:43.163][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-15 22:18:43.165][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:18:43.167][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:43.169][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:18:43.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-15 22:18:43.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:18:43.179][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-15 22:18:43.181][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:18:43.184][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:18:43.186][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:18:43.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:43.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:43.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:43.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:43.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:43.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:43.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:43.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.230][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.232][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.241][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.243][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.245][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.247][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.253][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.254][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.258][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.263][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.274][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.275][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.298][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.306][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.315][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.326][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:43.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:43.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.330][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:43.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:43.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.336][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:43.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:43.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:43.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:43.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.363][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.368][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.375][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.376][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.379][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.385][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.387][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.389][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:43.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:43.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.400][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.407][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:43.408][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.411][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.412][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:18:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:18:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:18:43.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:18:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:18:43.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:18:43.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:18:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:18:43.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.563][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:43.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:43.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:43.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:43.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:18:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:18:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:18:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:18:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:18:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:18:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:18:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.685][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:18:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:43.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:43.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:18:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:18:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:43.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:18:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:18:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:18:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:18:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:18:43.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:18:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:18:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:43.832][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-15 22:18:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:43.854][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:43.855][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:43.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:43.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:43.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:43.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:43.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:43.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:43.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:43.911][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:18:43.913][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-15 22:18:43.914][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-15 22:18:43.916][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:43.918][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:43.920][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:43.922][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:43.923][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:43.925][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:43.927][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:43.928][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:43.929][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:43.931][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:43.932][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:43.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:43.996][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:43.998][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:44.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:44.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:44.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:44.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:44.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:44.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:44.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:44.063][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-15 22:18:44.064][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:44.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:44.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:44.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:44.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:44.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:44.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:44.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:18:44.085][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:18:44.087][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-15 22:18:44.088][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-15 22:18:44.090][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:44.092][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:44.094][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:18:44.096][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:18:44.098][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:18:44.099][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:18:44.101][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:18:44.102][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:18:44.103][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:18:44.105][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:18:44.106][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:18:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:44.152][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-15 22:18:44.153][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-15 22:18:44.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:44.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:44.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:44.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:44.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:44.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:44.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:18:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:18:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:18:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:18:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:18:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:18:44.225][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:18:44.227][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:18:44.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:18:44.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:44.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:44.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:44.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:44.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:44.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:18:44.269][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:18:44.271][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:18:44.273][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:18:44.274][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:18:44.275][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:18:44.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:18:44.277][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:18:44.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:18:44.280][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:18:44.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  11.15    0.70   17.90

Example timings