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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 199/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: c3d59a4
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

CHECK results for biodbHmdb on palomino6

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.11.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
StartedAt: 2024-07-15 22:08:59 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 22:10:16 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 77.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'C:/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-15 22:09:55.687][biodb::testContext]
biodb.INFO [2024-07-15 22:09:55.691][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:09:55.692][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-15 22:09:55.693][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:09:55.694][biodb::testContext]
biodb.INFO [2024-07-15 22:09:55.696][biodb::testThat]
biodb.INFO [2024-07-15 22:09:55.698][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-15 22:09:55.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:09:55.701][biodb::testThat]
biodb.INFO [2024-07-15 22:09:55.831][biodb::testContext]
biodb.INFO [2024-07-15 22:09:55.832][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:09:55.833][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-15 22:09:55.834][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:09:55.835][biodb::testContext]
biodb.INFO [2024-07-15 22:09:55.845][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:09:55.854][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:09:55.861][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:09:55.862][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:09:55.864][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.868][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:09:55.884][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.888][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:09:55.890][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.894][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:09:55.895][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:09:55.897][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:09:55.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.901][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:09:55.902][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:09:55.903][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.907][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:09:55.909][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:09:55.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.913][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:09:55.914][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:09:55.915][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:09:55.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.919][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:09:55.920][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.924][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:09:55.926][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:09:55.928][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:09:55.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.932][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:09:55.934][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:09:55.935][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:09:55.936][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:09:55.937][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:09:55.939][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:09:55.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.943][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:09:55.944][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:09:55.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.949][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:09:55.950][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:09:55.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.954][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:09:55.955][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:09:55.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.959][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:09:55.960][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:09:55.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.965][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:09:55.966][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:09:55.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.970][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:09:55.971][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:09:55.976][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:09:55.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.981][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:09:55.982][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:09:55.983][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:09:55.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:55.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:55.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:55.989][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:09:56.016][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.029][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:09:56.031][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.039][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:09:56.040][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.041][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.042][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.043][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.045][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:09:56.046][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:09:56.047][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.048][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:09:56.049][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:09:56.050][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.051][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.052][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:09:56.052][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:09:56.052][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:09:56.052][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:09:56.052][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:09:56.053][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:09:56.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.056][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.057][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:09:56.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.059][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.061][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.062][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.064][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.065][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.067][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:09:56.069][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.070][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:09:56.071][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.072][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:09:56.073][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.074][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.075][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.076][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.077][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:09:56.079][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:09:56.080][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.081][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:09:56.082][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:09:56.083][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.084][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.085][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:09:56.085][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:09:56.085][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:09:56.085][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:09:56.085][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:09:56.087][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:09:56.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.090][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:09:56.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.093][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.094][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.095][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.096][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.097][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.098][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.099][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:09:56.101][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.102][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:09:56.103][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.104][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:09:56.105][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.107][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.108][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.109][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.110][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:09:56.111][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:09:56.112][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.113][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:09:56.114][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:09:56.115][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.116][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.117][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.119][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:09:56.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:09:56.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.125][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.126][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.128][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.129][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.130][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.131][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:09:56.133][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.134][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:09:56.135][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.136][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:09:56.137][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.138][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.139][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.141][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.142][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:09:56.143][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:09:56.144][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.145][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:09:56.146][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:09:56.147][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.148][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.149][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.150][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:09:56.151][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.152][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.153][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:09:56.154][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.155][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.156][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.157][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.158][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.159][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.160][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.161][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.165][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:09:56.166][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.257][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:09:56.261][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:09:56.262][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:09:56.264][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:09:56.265][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:09:56.267][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:09:56.268][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:09:56.270][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:09:56.271][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:09:56.272][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:09:56.274][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:09:56.275][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:09:56.277][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:09:56.278][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:09:56.279][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:09:56.281][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:09:56.282][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:09:56.283][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:09:56.285][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:09:56.286][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:09:56.288][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:09:56.289][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:09:56.291][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:09:56.292][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:09:56.293][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:09:56.295][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:09:56.296][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:09:56.298][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:09:56.299][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:09:56.300][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:09:56.302][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:09:56.303][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:09:56.305][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:09:56.306][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:09:56.307][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:09:56.309][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:09:56.310][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:09:56.311][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:09:56.313][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:09:56.314][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:09:56.316][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:09:56.317][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:09:56.319][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:09:56.320][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:09:56.322][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:09:56.323][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:09:56.325][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:09:56.326][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:09:56.327][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:09:56.329][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:09:56.330][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:09:56.332][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:09:56.333][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:09:56.334][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:09:56.336][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:09:56.337][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:09:56.339][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:09:56.340][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:09:56.341][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:09:56.343][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:09:56.344][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:09:56.345][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:09:56.347][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:09:56.348][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:09:56.350][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:09:56.351][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:09:56.353][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:09:56.354][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:09:56.355][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:09:56.357][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:09:56.358][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:09:56.359][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:09:56.361][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:09:56.362][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:09:56.365][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:09:56.367][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:09:56.368][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:09:56.370][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:09:56.371][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:09:56.372][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:09:56.374][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:09:56.375][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:09:56.377][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:09:56.394][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:09:56.397][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:09:56.399][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:09:56.401][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.403][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:09:56.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:09:56.559][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:09:56.567][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:09:56.569][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.571][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.573][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:09:56.574][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.575][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:09:56.576][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.577][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.578][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:09:56.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:09:56.580][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.581][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:09:56.582][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:09:56.583][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:09:56.585][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:09:56.586][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:09:56.586][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:09:56.586][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:09:56.587][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:09:56.588][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.589][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.590][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:09:56.592][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:09:56.593][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:09:56.594][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:09:56.595][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:09:56.595][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:09:56.597][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.598][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.599][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:09:56.600][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:09:56.605][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:09:56.607][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:09:56.609][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:09:56.610][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:09:56.612][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:09:56.631][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:09:56.632][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:09:56.641][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:09:56.644][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:09:56.648][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:09:56.649][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:09:56.651][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:09:56.652][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:09:56.653][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:09:56.653][self$setPropertyValue] Setting property "urls" to "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:09:56.654][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:09:56.655][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:09:56.656][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:09:56.657][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:09:56.658][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:09:56.673][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:09:56.675][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:09:56.676][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:09:56.678][private$addConnectorRules] Create new rule for URL "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:09:56.679][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:09:56.680][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:09:56.688][biodb::testThat]
biodb.INFO [2024-07-15 22:09:56.689][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-15 22:09:56.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:09:56.692][biodb::testThat]
biodb.TRACE[2024-07-15 22:09:56.697][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-15 22:09:56.700][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:09:56.703][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:09:56.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:09:56.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:56.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:56.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:56.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:56.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:56.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:09:56.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:56.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:56.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.741][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.757][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:56.758][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:56.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:56.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.789][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.791][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.799][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:56.800][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:56.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:56.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:56.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:56.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.826][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:56.827][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:56.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:56.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.835][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:56.836][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:56.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.838][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:56.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:56.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:56.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:56.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.847][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:56.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.853][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:56.854][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:56.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:56.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.862][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:56.863][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:56.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.871][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:56.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:56.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:56.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:56.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:56.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:56.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:56.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:56.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:56.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.908][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:56.909][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:56.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.917][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:56.918][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:56.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:56.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:56.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:56.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.930][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.937][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:09:56.938][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:56.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:09:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.994][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:56.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.164][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.208][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:57.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:57.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:57.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:09:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:09:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.329][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:57.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:57.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:57.366][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:09:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:09:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:09:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:09:57.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:09:57.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:09:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:09:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:09:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:09:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:57.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.130][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.131][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.165][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.166][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.259][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.299][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.303][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.332][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.333][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.335][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.368][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.396][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.397][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.399][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.516][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.518][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.523][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.567][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.568][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.598][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.599][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.673][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.703][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.726][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.730][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.731][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.747][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:58.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:58.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.757][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.758][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:58.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.768][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.770][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:58.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.772][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:58.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.790][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.791][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:58.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:58.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.814][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:58.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.823][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.824][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:58.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.826][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.837][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:58.838][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:58.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.848][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:58.850][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:58.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.852][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:58.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:58.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.875][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:58.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.889][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.898][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.899][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:58.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.911][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:58.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:58.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:58.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.925][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.932][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.933][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:58.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:58.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:58.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:58.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:58.945][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:09:58.962][biodb::testThat]
biodb.INFO [2024-07-15 22:09:58.964][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-15 22:09:58.965][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:09:58.966][biodb::testThat]
biodb.DEBUG[2024-07-15 22:09:58.980][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-15 22:09:58.989][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:09:58.996][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:58.998][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:09:59.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:09:59.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:09:59.017][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-15 22:09:59.019][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:09:59.046][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:09:59.048][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:09:59.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:09:59.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:09:59.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:09:59.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:09:59.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:09:59.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:09:59.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:09:59.067][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.070][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.076][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.077][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.085][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.086][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.088][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.090][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.094][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.095][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.097][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.106][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.112][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.113][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.123][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.134][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.140][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.141][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.150][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.152][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.158][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:59.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:59.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:59.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:59.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:59.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.171][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.177][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.196][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.211][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.212][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:59.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:59.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.223][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.229][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:09:59.230][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:09:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.251][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:09:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.267][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:09:59.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:09:59.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:09:59.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:09:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:09:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:09:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:59.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:59.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:09:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:09:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:59.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:09:59.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:09:59.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:09:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:09:59.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:09:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.475][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:59.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:59.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:59.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:09:59.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:09:59.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.497][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:09:59.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:09:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:09:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.552][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:09:59.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:09:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:09:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.601][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:09:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-15 22:09:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-15 22:09:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-15 22:09:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-15 22:09:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-15 22:09:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-15 22:09:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:09:59.628][biodb::testThat]
biodb.INFO [2024-07-15 22:09:59.630][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-15 22:09:59.631][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:09:59.632][biodb::testThat]
biodb.TRACE[2024-07-15 22:09:59.636][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.639][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.641][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-15 22:09:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.695][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-15 22:09:59.696][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-15 22:09:59.697][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:09:59.698][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:09:59.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.702][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.703][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:09:59.705][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.706][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:09:59.707][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:09:59.709][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:09:59.710][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:09:59.711][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:09:59.712][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:09:59.714][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:09:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:09:59.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:09:59.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.733][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:09:59.734][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:09:59.735][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:09:59.756][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.758][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.760][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.762][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-15 22:09:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.814][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-15 22:09:59.863][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:09:59.865][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-15 22:09:59.866][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-15 22:09:59.878][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.880][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.882][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:09:59.884][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:09:59.885][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:09:59.899][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:09:59.901][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:09:59.902][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:09:59.903][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:09:59.904][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:09:59.905][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:09:59.908][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:09:59.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:09:59.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.927][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:09:59.928][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:09:59.929][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:09:59.961][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.963][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.965][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:09:59.967][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-15 22:09:59.986][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:09:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:09:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:09:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:00.003][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-15 22:10:00.005][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-15 22:10:00.007][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-15 22:10:00.008][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-15 22:10:00.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.019][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.021][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:00.022][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.023][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:00.025][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:00.026][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:00.028][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:00.029][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:00.030][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:10:00.031][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:10:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.038][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.043][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.048][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:00.053][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:00.055][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:10:00.056][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-15 22:10:00.083][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.084][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-15 22:10:00.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:00.086][biodb::testThat]
biodb.TRACE[2024-07-15 22:10:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:00.127][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-15 22:10:00.128][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:10:00.129][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-15 22:10:00.131][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.133][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.134][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:00.136][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:00.137][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:00.139][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:00.140][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:00.141][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:00.142][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:00.143][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:10:00.144][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:10:00.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:00.164][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:00.165][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-15 22:10:00.198][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.199][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-15 22:10:00.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:00.201][biodb::testThat]
biodb.TRACE[2024-07-15 22:10:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:10:00.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:10:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:10:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:10:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-15 22:10:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-15 22:10:00.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-15 22:10:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:00.299][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-15 22:10:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-15 22:10:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:00.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:10:00.414][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.416][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-15 22:10:00.417][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:00.418][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.431][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.432][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-15 22:10:00.434][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:00.435][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.449][biodb::testThat]
biodb.INFO [2024-07-15 22:10:00.450][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-15 22:10:00.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:00.453][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:00.465][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-15 22:10:00.858][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-15 22:10:05.411][biodb::testThat]
biodb.INFO [2024-07-15 22:10:05.412][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-15 22:10:05.413][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:05.415][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:05.629][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-15 22:10:06.490][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:06.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.495][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:06.496][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:06.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.500][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:06.501][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:06.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.503][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:10:06.505][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.506][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-15 22:10:06.507][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:06.508][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:06.510][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-15 22:10:06.548][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:10:06.550][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.553][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:10:06.601][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-15 22:10:06.603][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-15 22:10:06.605][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-15 22:10:06.607][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:10:06.608][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.610][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:10:06.611][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:10:06.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:06.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:06.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:06.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:06.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:06.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:06.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:06.628][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:06.663][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-15 22:10:06.664][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-15 22:10:06.687][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.688][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-15 22:10:06.689][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:06.690][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:06.698][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-15 22:10:06.700][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-15 22:10:06.701][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:10:06.703][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.704][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:10:06.707][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-15 22:10:06.708][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-15 22:10:06.709][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-15 22:10:06.711][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:10:06.712][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.714][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:10:06.715][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:10:06.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:06.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:06.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:06.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:06.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:06.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:06.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.747][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:06.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:06.779][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-15 22:10:06.780][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-15 22:10:06.781][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-15 22:10:06.806][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.807][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-15 22:10:06.808][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:06.809][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.854][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.855][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-15 22:10:06.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:06.858][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:06.861][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.863][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.864][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:06.866][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.867][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:06.869][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:06.870][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:06.871][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:06.873][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-15 22:10:06.890][biodb::testThat]
biodb.INFO [2024-07-15 22:10:06.892][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-15 22:10:06.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:06.894][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:06.897][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.899][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.900][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:06.902][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:06.903][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:06.908][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:06.916][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:06.918][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:06.919][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-15 22:10:06.943][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:06.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:06.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.948][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:06.950][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:06.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.952][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:06.953][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:06.954][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:06.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:06.956][ef$get] fields variable is a list.
biodb.INFO [2024-07-15 22:10:06.957][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:10:06.959][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:10:06.966][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:10:06.967][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:10:06.968][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:06.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:06.970][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:06.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:06.972][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:06.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:10:06.979][biodb::testContext]
biodb.INFO [2024-07-15 22:10:06.980][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:10:06.981][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-15 22:10:06.982][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:10:06.983][biodb::testContext]
biodb.INFO [2024-07-15 22:10:06.989][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:10:06.991][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:10:06.996][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:06.998][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:10:06.999][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.003][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:10:07.005][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.009][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:10:07.010][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.014][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:10:07.015][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:10:07.016][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:10:07.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.020][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:10:07.021][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:10:07.022][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.026][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:10:07.027][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:10:07.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.031][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:10:07.032][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:10:07.033][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:10:07.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.037][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:10:07.038][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.042][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:10:07.043][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:10:07.045][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:10:07.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.048][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:10:07.049][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:10:07.051][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:10:07.052][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:10:07.058][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:10:07.060][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:10:07.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.065][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:10:07.066][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:10:07.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.070][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:10:07.071][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:10:07.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.075][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:10:07.076][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:10:07.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.080][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:10:07.082][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:10:07.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.086][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:10:07.087][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:10:07.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.091][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:10:07.092][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:10:07.097][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:10:07.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.101][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:10:07.102][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:10:07.103][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:10:07.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.108][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:10:07.109][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.111][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:10:07.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:07.114][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.116][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.117][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.118][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:10:07.119][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:07.120][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.121][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:10:07.122][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:07.123][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.125][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.126][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:07.126][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:10:07.126][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:10:07.126][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:10:07.126][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:10:07.127][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:07.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.129][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.130][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:07.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.133][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.134][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.135][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.136][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.137][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.138][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.139][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:10:07.141][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.142][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:10:07.143][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.144][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:07.145][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.147][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.148][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.149][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.150][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:10:07.151][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:07.152][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.153][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:10:07.154][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:07.155][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.156][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.157][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:07.157][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:10:07.157][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:10:07.157][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:10:07.157][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:10:07.158][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:07.159][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.161][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:07.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.163][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.164][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.166][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.167][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.168][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.169][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.170][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.171][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:10:07.173][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.174][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:10:07.180][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:07.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.186][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.187][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.188][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:10:07.189][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:07.190][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.192][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:10:07.193][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:07.195][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.196][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.197][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.198][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:07.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.202][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:07.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.205][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.206][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.210][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.211][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:10:07.213][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.215][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:10:07.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.218][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:07.219][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.220][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.222][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.223][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.224][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:10:07.225][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:07.227][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.228][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:10:07.229][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:07.230][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.232][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.233][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.234][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:07.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.237][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.238][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:07.239][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.240][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.241][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.242][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.243][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.244][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.245][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.247][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.248][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:07.249][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.345][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:10:07.346][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:10:07.348][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:10:07.349][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:10:07.351][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:10:07.352][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:10:07.354][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:10:07.356][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:10:07.358][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:10:07.360][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:10:07.362][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:10:07.363][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:10:07.365][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:10:07.366][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:10:07.367][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:10:07.369][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:10:07.370][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:10:07.372][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:10:07.373][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:10:07.375][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:10:07.376][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:10:07.377][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:10:07.379][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:10:07.380][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:10:07.382][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:10:07.383][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:10:07.384][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:10:07.386][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:10:07.387][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:10:07.389][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:10:07.390][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:10:07.392][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:10:07.393][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:10:07.395][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:10:07.396][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:10:07.398][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:10:07.399][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:10:07.400][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:10:07.402][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:10:07.403][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:10:07.405][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:10:07.406][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:10:07.407][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:10:07.409][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:10:07.410][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:10:07.412][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:10:07.413][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:10:07.415][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:10:07.422][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:10:07.424][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:10:07.426][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:10:07.427][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:10:07.428][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:10:07.430][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:10:07.431][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:10:07.433][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:10:07.434][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:10:07.436][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:10:07.437][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:10:07.439][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:10:07.440][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:10:07.442][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:10:07.444][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:10:07.446][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:10:07.447][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:10:07.449][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:10:07.450][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:10:07.452][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:10:07.453][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:10:07.454][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:10:07.456][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:10:07.457][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:10:07.459][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:10:07.460][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:10:07.461][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:10:07.463][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:10:07.464][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:10:07.466][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:10:07.467][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:10:07.469][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:10:07.470][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:10:07.471][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:10:07.473][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:10:07.474][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:10:07.477][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:10:07.479][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:07.480][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.482][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:07.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:07.607][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:10:07.609][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:07.611][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.612][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.613][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.614][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:07.615][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.616][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:10:07.618][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.619][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.620][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:10:07.621][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:07.622][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.623][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:10:07.624][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:10:07.625][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:10:07.626][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:07.627][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:07.627][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:10:07.627][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:10:07.629][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:10:07.630][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.630][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.631][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:07.633][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:07.633][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:07.634][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:07.637][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:10:07.637][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:10:07.638][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.639][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.640][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:07.642][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:07.643][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:10:07.645][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:10:07.646][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:10:07.648][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:10:07.655][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:10:07.659][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:07.660][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:10:07.661][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:07.663][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:07.664][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:07.665][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:07.666][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:10:07.667][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:10:07.669][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:10:07.669][self$setPropertyValue] Setting property "urls" to "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:10:07.670][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:07.671][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:07.672][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:10:07.673][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:10:07.674][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:07.675][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:07.677][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:07.678][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:07.679][private$addConnectorRules] Create new rule for URL "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:07.680][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:07.681][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:10:07.683][biodb::testThat]
biodb.INFO [2024-07-15 22:10:07.685][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-15 22:10:07.686][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:07.687][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:07.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:07.693][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:07.695][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:07.696][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:07.697][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:07.699][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:07.700][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:07.701][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:07.703][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:07.706][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-15 22:10:07.714][biodb::testThat]
biodb.INFO [2024-07-15 22:10:07.715][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-15 22:10:07.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:07.717][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:07.719][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-15 22:10:07.720][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:10:07.722][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:07.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:10:07.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-15 22:10:07.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:10:07.740][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-15 22:10:07.742][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:10:07.743][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:10:07.744][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:10:07.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:07.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:07.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:07.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:07.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:07.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:07.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:07.762][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:07.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:07.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.765][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.771][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:07.772][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:07.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.774][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.776][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:07.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:07.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.780][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.781][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.794][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.796][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.807][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.813][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.814][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:07.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:07.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:07.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:07.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:07.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:07.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.833][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.839][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:07.840][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:07.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.842][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.847][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:07.849][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:07.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:07.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:07.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:07.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:07.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:07.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:07.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:07.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:07.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:07.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:07.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.896][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:07.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:07.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.906][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:07.907][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:07.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:07.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:07.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:07.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.932][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:07.933][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:07.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:07.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.959][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.973][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:07.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:08.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:08.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:08.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:08.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:08.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:08.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:08.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.112][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:08.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:08.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:08.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:08.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:08.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:08.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.258][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:08.311][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-15 22:10:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:08.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-15 22:10:08.334][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:10:08.335][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:10:08.336][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:10:08.337][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:10:08.338][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.340][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.342][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:10:08.349][biodb::testContext]
biodb.INFO [2024-07-15 22:10:08.350][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:10:08.351][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-15 22:10:08.352][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-15 22:10:08.353][biodb::testContext]
biodb.INFO [2024-07-15 22:10:08.359][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:10:08.362][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-15 22:10:08.366][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:08.368][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-15 22:10:08.369][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.373][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-15 22:10:08.374][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.378][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-15 22:10:08.379][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.383][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-15 22:10:08.384][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-15 22:10:08.385][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-15 22:10:08.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.389][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-15 22:10:08.390][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-15 22:10:08.391][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.395][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-15 22:10:08.396][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-15 22:10:08.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.400][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-15 22:10:08.401][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-15 22:10:08.403][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-15 22:10:08.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.407][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-15 22:10:08.408][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.412][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-15 22:10:08.413][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-15 22:10:08.414][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-15 22:10:08.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.424][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:10:08.425][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-15 22:10:08.426][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-15 22:10:08.427][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-15 22:10:08.429][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-15 22:10:08.430][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-15 22:10:08.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.434][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-15 22:10:08.435][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-15 22:10:08.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.440][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-15 22:10:08.441][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-15 22:10:08.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.446][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-15 22:10:08.447][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-15 22:10:08.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.451][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-15 22:10:08.452][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-15 22:10:08.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.456][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-15 22:10:08.457][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-15 22:10:08.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.461][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-15 22:10:08.463][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-15 22:10:08.468][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-15 22:10:08.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.472][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-15 22:10:08.474][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-15 22:10:08.475][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-15 22:10:08.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.480][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-15 22:10:08.482][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.483][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-15 22:10:08.484][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.485][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:08.487][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.488][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.489][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.491][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:10:08.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:08.494][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.495][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-15 22:10:08.496][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:08.497][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.500][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:08.500][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:10:08.500][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:10:08.500][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:10:08.500][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:10:08.501][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:08.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.503][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.504][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:08.506][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.507][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.508][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.509][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.511][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:08.512][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:08.513][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.514][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.515][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-15 22:10:08.517][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.518][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:10:08.519][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.521][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:08.522][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.523][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.524][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.525][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.526][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:10:08.527][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:08.529][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.530][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-15 22:10:08.531][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:08.532][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.533][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.534][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:08.534][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-15 22:10:08.534][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-15 22:10:08.534][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-15 22:10:08.534][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-15 22:10:08.536][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:08.537][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.538][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.539][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:08.540][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.546][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.548][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.549][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.551][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:08.552][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:08.553][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.554][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.555][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-15 22:10:08.557][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.558][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-15 22:10:08.559][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.560][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:08.561][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.562][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.564][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.565][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.566][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-15 22:10:08.567][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:08.568][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.569][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-15 22:10:08.570][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:08.571][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.572][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.573][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.574][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:08.575][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.576][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.578][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:08.579][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.580][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.581][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.582][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.583][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:08.584][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:08.585][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.586][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.587][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-15 22:10:08.589][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.590][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-15 22:10:08.591][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.592][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:08.593][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.594][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.597][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.598][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-15 22:10:08.599][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:08.600][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.601][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-15 22:10:08.602][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:08.603][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.604][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.605][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.606][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-15 22:10:08.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.608][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.609][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:08.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:08.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:08.612][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.613][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.615][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:08.616][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:08.617][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.618][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:08.619][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:08.620][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.711][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-15 22:10:08.712][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-15 22:10:08.714][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-15 22:10:08.715][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-15 22:10:08.717][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-15 22:10:08.718][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:10:08.719][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-15 22:10:08.721][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-15 22:10:08.722][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-15 22:10:08.724][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:10:08.725][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:10:08.726][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-15 22:10:08.728][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-15 22:10:08.729][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-15 22:10:08.731][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-15 22:10:08.732][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:10:08.733][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-15 22:10:08.735][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-15 22:10:08.736][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-15 22:10:08.738][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-15 22:10:08.739][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-15 22:10:08.740][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-15 22:10:08.742][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-15 22:10:08.743][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-15 22:10:08.745][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-15 22:10:08.746][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-15 22:10:08.748][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-15 22:10:08.749][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-15 22:10:08.750][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-15 22:10:08.752][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-15 22:10:08.753][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-15 22:10:08.754][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-15 22:10:08.756][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-15 22:10:08.757][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-15 22:10:08.759][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-15 22:10:08.760][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-15 22:10:08.767][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-15 22:10:08.769][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-15 22:10:08.770][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-15 22:10:08.772][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-15 22:10:08.773][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-15 22:10:08.775][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-15 22:10:08.776][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-15 22:10:08.778][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-15 22:10:08.779][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-15 22:10:08.781][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-15 22:10:08.782][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-15 22:10:08.783][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-15 22:10:08.785][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-15 22:10:08.786][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-15 22:10:08.788][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-15 22:10:08.789][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-15 22:10:08.791][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-15 22:10:08.792][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-15 22:10:08.793][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-15 22:10:08.795][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-15 22:10:08.796][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-15 22:10:08.798][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-15 22:10:08.799][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-15 22:10:08.801][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-15 22:10:08.802][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-15 22:10:08.803][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-15 22:10:08.805][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-15 22:10:08.806][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-15 22:10:08.808][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-15 22:10:08.809][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-15 22:10:08.811][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-15 22:10:08.812][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-15 22:10:08.813][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-15 22:10:08.815][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-15 22:10:08.816][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-15 22:10:08.818][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-15 22:10:08.819][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-15 22:10:08.820][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-15 22:10:08.822][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-15 22:10:08.823][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-15 22:10:08.825][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-15 22:10:08.826][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-15 22:10:08.827][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-15 22:10:08.829][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-15 22:10:08.830][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-15 22:10:08.832][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-15 22:10:08.833][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-15 22:10:08.834][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-15 22:10:08.836][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-15 22:10:08.838][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-15 22:10:08.839][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.841][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-15 22:10:08.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:08.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:08.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:08.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:08.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:08.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:08.974][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-15 22:10:08.976][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:08.978][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.980][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.981][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-15 22:10:08.983][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:08.984][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-15 22:10:08.985][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.986][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-15 22:10:08.994][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-15 22:10:08.996][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-15 22:10:08.997][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:08.998][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-15 22:10:09.000][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-15 22:10:09.001][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-15 22:10:09.002][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-15 22:10:09.003][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-15 22:10:09.003][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-15 22:10:09.003][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-15 22:10:09.004][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-15 22:10:09.005][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:09.006][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:09.007][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-15 22:10:09.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-15 22:10:09.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-15 22:10:09.011][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-15 22:10:09.012][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:10:09.012][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-15 22:10:09.013][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:09.014][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:09.015][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-15 22:10:09.016][self$setPropertyValue]
biodb.DEBUG[2024-07-15 22:10:09.018][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-15 22:10:09.019][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-15 22:10:09.021][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-15 22:10:09.022][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-15 22:10:09.024][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-15 22:10:09.027][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:09.028][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-15 22:10:09.030][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:09.032][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:09.033][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:09.034][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:09.036][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-15 22:10:09.037][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-15 22:10:09.038][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-15 22:10:09.038][self$setPropertyValue] Setting property "urls" to "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-15 22:10:09.039][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-15 22:10:09.040][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-15 22:10:09.041][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-15 22:10:09.042][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-15 22:10:09.043][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-15 22:10:09.045][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:09.046][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:09.047][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:09.049][private$addConnectorRules] Create new rule for URL "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-15 22:10:09.050][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-15 22:10:09.052][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-15 22:10:09.053][biodb::testThat]
biodb.INFO [2024-07-15 22:10:09.054][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-15 22:10:09.056][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-15 22:10:09.057][biodb::testThat]
biodb.DEBUG[2024-07-15 22:10:09.059][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:10:09.060][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-15 22:10:09.061][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-15 22:10:09.068][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:09.070][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:09.072][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:09.073][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:09.075][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:09.076][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:09.078][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:09.079][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:09.080][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:09.081][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:10:09.082][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-15 22:10:09.084][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-15 22:10:09.085][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:10:09.087][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:09.089][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:10:09.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-15 22:10:09.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:10:09.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-15 22:10:09.097][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:10:09.098][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:10:09.100][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:10:09.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:09.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:09.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:09.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:09.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:09.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:09.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:09.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.136][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.137][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.141][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.146][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.147][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.149][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.156][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.157][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.159][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.161][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.175][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.176][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.188][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.207][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.209][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.215][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.216][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:09.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:09.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.227][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:09.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:09.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:09.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:09.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.236][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:09.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:09.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.262][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.278][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.288][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:09.289][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:09.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:09.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:09.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:09.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:09.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:09.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.306][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:09.307][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.311][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:09.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:09.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.351][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:09.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:09.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.431][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:09.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:09.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:09.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:09.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.441][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:09.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:09.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:09.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:09.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:09.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:09.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:09.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.487][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:09.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:09.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.882][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:09.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:09.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.931][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:09.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.983][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:09.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:09.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:09.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:10.014][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-15 22:10:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:10.033][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:10.034][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:10:10.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:10.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:10.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:10.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:10.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:10.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:10.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:10.048][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-15 22:10:10.050][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-15 22:10:10.052][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:10.053][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-15 22:10:10.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-15 22:10:10.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-15 22:10:10.059][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-15 22:10:10.061][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-15 22:10:10.062][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-15 22:10:10.063][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-15 22:10:10.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:10.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:10.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:10.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:10.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:10.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:10.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:10.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.085][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.098][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.099][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.104][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.109][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.110][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.112][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.118][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.119][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.121][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.131][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.137][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.138][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.141][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.147][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.152][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.166][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.175][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.177][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.185][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:10.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:10.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:10.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:10.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:10.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.204][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:10.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:10.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.211][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.217][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.224][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.243][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.252][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.254][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:10.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:10.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.271][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:10.272][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-15 22:10:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.303][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-15 22:10:10.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.312][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-15 22:10:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-15 22:10:10.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-15 22:10:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-15 22:10:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-15 22:10:10.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-15 22:10:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-15 22:10:10.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-15 22:10:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:10.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:10.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-15 22:10:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-15 22:10:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.468][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-15 22:10:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-15 22:10:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-15 22:10:10.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.523][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-15 22:10:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:10.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-15 22:10:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-15 22:10:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:10.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-15 22:10:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-15 22:10:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-15 22:10:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-15 22:10:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.601][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-15 22:10:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-15 22:10:10.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-15 22:10:10.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:10.650][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-15 22:10:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:10.672][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:10.673][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:10.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:10.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:10.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:10.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:10.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:10.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:10.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:10.692][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:10:10.693][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-15 22:10:10.694][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-15 22:10:10.696][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:10.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:10.700][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:10.701][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:10.702][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:10.704][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:10.705][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:10.706][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:10.707][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:10.709][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:10:10.710][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:10:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:10.751][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:10.752][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:10:10.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:10.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:10.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:10.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:10.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:10.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:10.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:10.770][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.157][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:11.190][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-15 22:10:11.192][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:10:11.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:11.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:11.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:11.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:11.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:11.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:11.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-15 22:10:11.218][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-15 22:10:11.220][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-15 22:10:11.221][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-15 22:10:11.224][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:11.227][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:11.229][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-15 22:10:11.231][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-15 22:10:11.232][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-15 22:10:11.233][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-15 22:10:11.235][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-15 22:10:11.236][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-15 22:10:11.237][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-15 22:10:11.238][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-15 22:10:11.239][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-15 22:10:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.250][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.259][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.276][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:11.281][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-15 22:10:11.282][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-15 22:10:11.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:11.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:11.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:11.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:11.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:11.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:11.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-15 22:10:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-15 22:10:11.324][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-15 22:10:11.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-15 22:10:11.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-15 22:10:11.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-15 22:10:11.328][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-15 22:10:11.329][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-15 22:10:11.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-15 22:10:11.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:11.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:11.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:11.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:11.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:11.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-15 22:10:11.357][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-15 22:10:11.358][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-15 22:10:11.360][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-15 22:10:11.361][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-15 22:10:11.362][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-15 22:10:11.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-15 22:10:11.365][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-15 22:10:11.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-15 22:10:11.367][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-15 22:10:11.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.35    0.84   17.64

Example timings