Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-03-28 11:38:51 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 201/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: devel
git_last_commit: 8651955
git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

CHECK results for biodbHmdb on lconway


To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz
StartedAt: 2024-03-27 19:46:07 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 19:47:12 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 65.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++11 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-03-27 19:46:52.167][biodb::testContext]
biodb.INFO [2024-03-27 19:46:52.172][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:52.173][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-03-27 19:46:52.175][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:52.177][biodb::testContext]
biodb.INFO [2024-03-27 19:46:52.179][biodb::testThat]
biodb.INFO [2024-03-27 19:46:52.181][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-03-27 19:46:52.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:52.184][biodb::testThat]
biodb.INFO [2024-03-27 19:46:52.417][biodb::testContext]
biodb.INFO [2024-03-27 19:46:52.419][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:52.421][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-03-27 19:46:52.424][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:52.427][biodb::testContext]
biodb.INFO [2024-03-27 19:46:52.441][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:46:52.443][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 19:46:52.454][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:46:52.456][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 19:46:52.458][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.464][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 19:46:52.503][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.509][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 19:46:52.510][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.516][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 19:46:52.518][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 19:46:52.520][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 19:46:52.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.525][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 19:46:52.526][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 19:46:52.528][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.533][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 19:46:52.535][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 19:46:52.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.540][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 19:46:52.542][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 19:46:52.543][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 19:46:52.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.548][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 19:46:52.550][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.555][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 19:46:52.556][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 19:46:52.558][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 19:46:52.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.563][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:46:52.564][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 19:46:52.565][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 19:46:52.567][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 19:46:52.568][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 19:46:52.570][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 19:46:52.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.576][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 19:46:52.577][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 19:46:52.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.582][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 19:46:52.584][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 19:46:52.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.589][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 19:46:52.590][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 19:46:52.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.595][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 19:46:52.596][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 19:46:52.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.602][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 19:46:52.604][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 19:46:52.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.609][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:46:52.611][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 19:46:52.641][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 19:46:52.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.648][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 19:46:52.649][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 19:46:52.651][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 19:46:52.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.659][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 19:46:52.710][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.732][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 19:46:52.733][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.735][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:46:52.737][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.738][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.740][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.742][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:46:52.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:46:52.746][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.747][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 19:46:52.749][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:46:52.750][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.752][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.754][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:46:52.754][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:46:52.754][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:46:52.754][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:46:52.754][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:46:52.755][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:46:52.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:46:52.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.762][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.771][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:52.774][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:52.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.776][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.778][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 19:46:52.781][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.782][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:46:52.783][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.785][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:46:52.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.787][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.789][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.790][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.791][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:46:52.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:46:52.794][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.796][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 19:46:52.797][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:46:52.799][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.800][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.801][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:46:52.801][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:46:52.801][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:46:52.801][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:46:52.801][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:46:52.803][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:46:52.804][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.805][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.807][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:46:52.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.811][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.813][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.815][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:52.816][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:52.817][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.819][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.821][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 19:46:52.823][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.824][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 19:46:52.826][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.828][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:46:52.830][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.831][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.832][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.834][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.835][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:46:52.836][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:46:52.838][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.839][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 19:46:52.840][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:46:52.841][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.843][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.844][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.845][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:46:52.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.849][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.850][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:46:52.852][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.853][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.855][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.856][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.857][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:52.859][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:52.860][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.862][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.864][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 19:46:52.866][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.868][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:46:52.869][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.870][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:46:52.872][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.873][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.875][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.876][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.877][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:46:52.879][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:46:52.880][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.882][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 19:46:52.883][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:46:52.884][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.886][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:52.888][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.889][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:46:52.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.893][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:46:52.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:52.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:52.897][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:46:52.899][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.900][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:52.901][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:52.902][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:52.904][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:52.910][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:46:52.911][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:52.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:52.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:52.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:52.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:52.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.022][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 19:46:53.038][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 19:46:53.041][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 19:46:53.043][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 19:46:53.045][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 19:46:53.048][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:46:53.050][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 19:46:53.052][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 19:46:53.054][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 19:46:53.056][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:46:53.059][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:46:53.061][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 19:46:53.062][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 19:46:53.065][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 19:46:53.067][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 19:46:53.069][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:46:53.071][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 19:46:53.073][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 19:46:53.076][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 19:46:53.078][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 19:46:53.080][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 19:46:53.081][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 19:46:53.084][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 19:46:53.086][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 19:46:53.088][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 19:46:53.091][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 19:46:53.093][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 19:46:53.096][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 19:46:53.098][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 19:46:53.100][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 19:46:53.103][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 19:46:53.105][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 19:46:53.107][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 19:46:53.109][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 19:46:53.111][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 19:46:53.112][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 19:46:53.114][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 19:46:53.117][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 19:46:53.119][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 19:46:53.121][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 19:46:53.123][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 19:46:53.125][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 19:46:53.127][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 19:46:53.129][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 19:46:53.131][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 19:46:53.134][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 19:46:53.136][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 19:46:53.139][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 19:46:53.141][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 19:46:53.143][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 19:46:53.145][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 19:46:53.147][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 19:46:53.149][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 19:46:53.151][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 19:46:53.153][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 19:46:53.172][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 19:46:53.174][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 19:46:53.176][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 19:46:53.178][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 19:46:53.180][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 19:46:53.182][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 19:46:53.184][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 19:46:53.186][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 19:46:53.188][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 19:46:53.190][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 19:46:53.192][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 19:46:53.194][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 19:46:53.196][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 19:46:53.198][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 19:46:53.200][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 19:46:53.202][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 19:46:53.204][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 19:46:53.206][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 19:46:53.208][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 19:46:53.210][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 19:46:53.212][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 19:46:53.214][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 19:46:53.216][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 19:46:53.218][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 19:46:53.221][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 19:46:53.223][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 19:46:53.225][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 19:46:53.227][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 19:46:53.236][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 19:46:53.239][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:46:53.243][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:46:53.244][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.247][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:53.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:53.452][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 19:46:53.468][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:46:53.471][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:53.473][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 19:46:53.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:53.476][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:46:53.478][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:53.479][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 19:46:53.480][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:53.482][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:46:53.483][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 19:46:53.485][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:46:53.486][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:53.487][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 19:46:53.489][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 19:46:53.491][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 19:46:53.492][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 19:46:53.494][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:46:53.494][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 19:46:53.494][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 19:46:53.495][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 19:46:53.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:53.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:53.499][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:46:53.501][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:46:53.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:46:53.503][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:46:53.505][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:46:53.505][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 19:46:53.506][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:53.507][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:53.509][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 19:46:53.510][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:46:53.519][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 19:46:53.522][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:46:53.524][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:46:53.527][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:46:53.529][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:46:53.566][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:46:53.568][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 19:46:53.575][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:46:53.581][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:46:53.587][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:46:53.588][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:46:53.590][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 19:46:53.592][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 19:46:53.594][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:46:53.594][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 19:46:53.595][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:46:53.596][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:46:53.598][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 19:46:53.599][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 19:46:53.601][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:46:53.637][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:46:53.639][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:46:53.641][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:46:53.643][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:46:53.644][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:46:53.646][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 19:46:53.658][biodb::testThat]
biodb.INFO [2024-03-27 19:46:53.659][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-03-27 19:46:53.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:53.662][biodb::testThat]
biodb.TRACE[2024-03-27 19:46:53.689][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-03-27 19:46:53.692][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:46:53.697][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:46:53.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:46:53.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:53.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:53.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:53.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:53.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:53.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:46:53.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:53.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:53.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.773][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:53.774][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.777][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:53.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:53.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.823][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:53.825][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:53.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.827][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:53.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.835][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:53.836][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:53.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.838][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:53.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:53.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.858][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:53.859][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:53.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.862][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.869][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:53.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:53.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.873][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:53.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:53.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:53.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.895][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:53.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.919][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:53.921][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:53.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.924][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:53.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:53.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:53.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.936][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:53.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:53.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.946][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:53.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.950][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:53.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:53.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:53.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:53.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:53.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.975][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:53.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:53.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.987][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:53.995][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:53.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:53.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:53.999][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.008][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:54.010][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:54.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.013][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:54.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.025][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.032][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:46:54.034][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:46:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:54.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:54.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:54.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:54.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:54.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.382][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:54.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:54.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.397][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.408][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:46:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:46:54.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.496][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:54.572][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 19:46:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:54.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:54.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:54.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:54.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:54.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:54.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.685][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.733][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.772][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.773][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.783][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.822][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.823][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.908][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.947][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.948][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.989][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.993][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:54.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.033][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.035][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.072][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.076][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.120][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.122][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.124][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.171][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.208][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.210][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.213][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.259][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.260][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.263][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.302][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.304][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.345][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.350][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.391][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.394][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.455][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.463][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.481][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.483][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.485][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:55.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:55.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.519][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.521][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.524][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.533][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.534][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.537][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.560][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.562][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.566][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.576][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:55.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.616][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.619][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:55.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.623][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.633][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.635][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:55.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.638][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.646][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:55.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:55.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.652][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.661][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:55.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:55.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.665][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:55.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:55.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.680][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.690][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:55.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:55.703][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:55.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.705][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:55.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.719][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.727][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:55.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:55.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.732][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:55.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:55.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.746][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.755][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.757][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.769][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.778][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:55.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:55.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.783][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 19:46:55.797][biodb::testThat]
biodb.INFO [2024-03-27 19:46:55.799][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-27 19:46:55.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:55.802][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:55.822][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-27 19:46:55.833][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:46:55.839][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:55.842][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:46:55.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 19:46:55.846][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 19:46:55.849][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-27 19:46:55.851][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:46:55.887][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:46:55.889][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:46:55.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:46:55.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:55.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:55.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:55.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:55.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:55.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:46:55.917][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:55.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.922][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:55.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.929][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.931][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.934][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.943][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.944][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.947][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.954][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.956][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.959][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.972][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.979][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.981][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.984][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:55.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.004][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.015][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.022][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.026][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.035][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.037][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.045][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:56.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:56.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:56.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:56.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:56.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.061][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:56.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.074][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.085][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.092][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.096][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.103][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.104][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.106][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:56.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.117][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.124][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:46:56.125][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.128][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:46:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:46:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:46:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:46:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:46:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:46:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:46:56.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:46:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:56.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:56.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:46:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:46:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:56.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:56.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:46:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:46:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:46:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:46:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:46:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.435][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:46:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:46:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:46:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.490][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:46:56.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:46:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.531][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.543][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:56.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.583][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 19:46:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-27 19:46:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-27 19:46:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-27 19:46:56.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-27 19:46:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-27 19:46:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-27 19:46:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 19:46:56.623][biodb::testThat]
biodb.INFO [2024-03-27 19:46:56.624][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-27 19:46:56.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:56.627][biodb::testThat]
biodb.TRACE[2024-03-27 19:46:56.631][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.636][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.638][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-03-27 19:46:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.702][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-03-27 19:46:56.705][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-27 19:46:56.706][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 19:46:56.708][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 19:46:56.710][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.712][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.714][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:56.717][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.718][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:56.720][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:56.722][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:56.723][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:56.725][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:46:56.726][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:46:56.728][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:46:56.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.770][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:46:56.772][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:46:56.773][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 19:46:56.797][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.798][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.801][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.803][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-03-27 19:46:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:56.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:56.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:56.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:56.847][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-03-27 19:46:56.936][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 19:46:56.939][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-27 19:46:56.940][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-27 19:46:56.962][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.964][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.966][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:56.968][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:56.969][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:56.993][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:56.994][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:56.996][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:56.997][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:46:56.999][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:46:57.000][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:46:57.003][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:57.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:57.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.026][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:46:57.029][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:46:57.030][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 19:46:57.061][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.063][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.066][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.068][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-03-27 19:46:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.111][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-03-27 19:46:57.113][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-03-27 19:46:57.115][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-27 19:46:57.117][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-27 19:46:57.119][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.121][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.123][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:57.125][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.127][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:57.128][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:57.130][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:57.131][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:57.133][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:46:57.134][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:46:57.136][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:46:57.138][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.150][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.162][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:46:57.163][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:46:57.164][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-03-27 19:46:57.194][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.195][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-03-27 19:46:57.197][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:57.198][biodb::testThat]
biodb.TRACE[2024-03-27 19:46:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.252][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-27 19:46:57.254][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 19:46:57.256][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-27 19:46:57.258][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.261][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.263][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:57.265][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:57.267][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:57.269][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:57.271][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:57.272][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:57.273][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:46:57.275][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:46:57.276][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:46:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:57.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:57.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:57.310][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:46:57.311][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-03-27 19:46:57.338][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.340][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-03-27 19:46:57.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:57.342][biodb::testThat]
biodb.TRACE[2024-03-27 19:46:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.380][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.392][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:57.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:57.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-27 19:46:57.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:57.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-27 19:46:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-27 19:46:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 19:46:57.499][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.501][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-27 19:46:57.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:57.503][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.517][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.519][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-27 19:46:57.520][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:57.522][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.535][biodb::testThat]
biodb.INFO [2024-03-27 19:46:57.536][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-27 19:46:57.538][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:57.540][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:57.546][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-03-27 19:46:58.807][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-03-27 19:46:58.847][biodb::testThat]
biodb.INFO [2024-03-27 19:46:58.848][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-27 19:46:58.850][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:58.851][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:59.235][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-03-27 19:46:59.261][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:59.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:59.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.266][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.268][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:59.269][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:59.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.274][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:59.275][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:59.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.278][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 19:46:59.280][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.281][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-03-27 19:46:59.282][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:59.284][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:59.286][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-03-27 19:46:59.372][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:46:59.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.376][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:46:59.397][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-03-27 19:46:59.399][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-27 19:46:59.401][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-27 19:46:59.403][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:46:59.406][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.407][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:46:59.409][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:46:59.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:46:59.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:59.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:59.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:59.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:59.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:46:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:59.476][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-27 19:46:59.478][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-03-27 19:46:59.506][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.508][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-03-27 19:46:59.509][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:59.511][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:59.560][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-03-27 19:46:59.562][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-03-27 19:46:59.564][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:46:59.567][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.569][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:46:59.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-03-27 19:46:59.574][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-27 19:46:59.576][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-27 19:46:59.578][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:46:59.580][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.582][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:46:59.583][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:46:59.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:46:59.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:59.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:59.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:59.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:59.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:46:59.605][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:46:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:46:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:46:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:46:59.650][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-27 19:46:59.652][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-03-27 19:46:59.654][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-03-27 19:46:59.680][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.681][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-03-27 19:46:59.683][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:59.684][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.739][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.741][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-03-27 19:46:59.742][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:59.743][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:59.746][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.748][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.751][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:59.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.763][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:59.765][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:59.767][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:59.768][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:59.770][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-03-27 19:46:59.785][biodb::testThat]
biodb.INFO [2024-03-27 19:46:59.786][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-03-27 19:46:59.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:46:59.789][biodb::testThat]
biodb.DEBUG[2024-03-27 19:46:59.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.795][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.797][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:46:59.799][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:46:59.800][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:46:59.802][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:46:59.804][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:46:59.805][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:46:59.807][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-03-27 19:46:59.822][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:46:59.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:46:59.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.827][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:46:59.828][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:46:59.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.831][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:46:59.832][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:59.834][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:46:59.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:46:59.837][ef$get] fields variable is a list.
biodb.INFO [2024-03-27 19:46:59.838][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 19:46:59.840][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 19:46:59.852][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 19:46:59.854][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 19:46:59.855][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:46:59.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:46:59.858][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:46:59.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:46:59.860][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 19:46:59.867][biodb::testContext]
biodb.INFO [2024-03-27 19:46:59.869][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:59.870][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-03-27 19:46:59.871][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:46:59.873][biodb::testContext]
biodb.INFO [2024-03-27 19:46:59.878][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:46:59.881][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 19:46:59.888][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:46:59.889][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 19:46:59.891][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.896][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 19:46:59.897][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.902][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 19:46:59.904][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.908][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 19:46:59.909][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 19:46:59.911][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 19:46:59.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.916][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 19:46:59.918][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 19:46:59.919][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.924][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 19:46:59.926][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 19:46:59.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.931][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 19:46:59.932][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 19:46:59.941][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 19:46:59.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.947][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 19:46:59.949][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.954][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 19:46:59.955][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 19:46:59.957][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 19:46:59.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.962][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:46:59.963][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 19:46:59.965][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 19:46:59.966][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 19:46:59.968][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 19:46:59.969][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 19:46:59.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.973][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 19:46:59.974][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 19:46:59.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.979][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 19:46:59.981][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 19:46:59.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.985][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 19:46:59.987][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 19:46:59.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.992][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 19:46:59.993][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 19:46:59.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:46:59.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:46:59.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:46:59.999][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 19:47:00.000][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 19:47:00.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.005][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:47:00.007][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 19:47:00.030][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 19:47:00.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.035][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 19:47:00.036][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 19:47:00.037][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 19:47:00.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.042][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 19:47:00.045][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.046][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 19:47:00.048][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.049][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:00.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.052][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.053][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.054][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.055][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:47:00.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:00.058][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.059][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 19:47:00.061][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:00.062][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.064][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:00.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:47:00.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:47:00.065][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:47:00.065][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:47:00.067][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:00.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.071][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:00.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.076][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.078][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.079][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.080][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.081][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.083][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 19:47:00.085][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.086][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:47:00.087][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:00.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.093][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.094][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.096][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:47:00.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:00.098][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.100][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 19:47:00.101][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:00.103][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.105][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:00.105][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:47:00.105][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:47:00.105][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:47:00.105][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:47:00.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:00.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.117][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.119][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:00.121][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.124][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.125][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.126][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.127][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.128][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.129][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.131][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 19:47:00.133][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.135][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 19:47:00.136][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.138][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:00.139][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.140][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.142][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.145][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:47:00.146][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:00.148][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.149][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 19:47:00.150][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:00.151][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.152][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.153][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.154][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:00.155][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.156][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.158][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:00.159][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.160][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.161][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.162][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.163][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.164][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.165][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.166][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.168][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 19:47:00.171][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.172][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:47:00.174][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.176][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:00.177][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.178][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.180][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.181][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.182][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:47:00.184][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:00.185][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.187][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 19:47:00.188][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:00.189][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.191][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.192][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.193][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:00.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:00.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.201][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.203][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.204][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.209][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.211][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:47:00.212][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.327][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 19:47:00.329][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 19:47:00.331][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 19:47:00.333][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 19:47:00.334][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 19:47:00.336][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:47:00.338][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 19:47:00.341][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 19:47:00.343][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 19:47:00.345][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:47:00.347][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:47:00.349][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 19:47:00.351][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 19:47:00.353][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 19:47:00.355][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 19:47:00.357][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:47:00.359][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 19:47:00.361][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 19:47:00.362][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 19:47:00.364][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 19:47:00.366][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 19:47:00.368][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 19:47:00.370][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 19:47:00.372][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 19:47:00.374][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 19:47:00.376][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 19:47:00.378][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 19:47:00.380][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 19:47:00.382][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 19:47:00.384][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 19:47:00.386][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 19:47:00.389][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 19:47:00.391][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 19:47:00.393][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 19:47:00.395][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 19:47:00.397][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 19:47:00.399][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 19:47:00.401][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 19:47:00.403][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 19:47:00.405][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 19:47:00.407][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 19:47:00.409][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 19:47:00.411][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 19:47:00.413][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 19:47:00.423][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 19:47:00.426][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 19:47:00.428][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 19:47:00.430][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 19:47:00.432][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 19:47:00.434][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 19:47:00.437][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 19:47:00.439][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 19:47:00.441][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 19:47:00.443][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 19:47:00.445][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 19:47:00.447][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 19:47:00.449][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 19:47:00.450][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 19:47:00.453][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 19:47:00.455][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 19:47:00.457][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 19:47:00.458][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 19:47:00.460][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 19:47:00.462][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 19:47:00.464][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 19:47:00.466][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 19:47:00.467][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 19:47:00.469][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 19:47:00.471][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 19:47:00.473][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 19:47:00.475][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 19:47:00.477][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 19:47:00.479][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 19:47:00.480][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 19:47:00.482][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 19:47:00.483][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 19:47:00.485][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 19:47:00.487][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 19:47:00.489][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 19:47:00.490][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 19:47:00.492][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 19:47:00.494][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 19:47:00.496][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 19:47:00.498][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 19:47:00.501][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:47:00.502][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:47:00.503][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.506][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:00.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:00.670][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 19:47:00.672][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:00.675][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.677][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.678][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.680][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:00.681][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.682][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 19:47:00.684][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.685][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.687][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 19:47:00.688][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:00.690][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.691][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 19:47:00.692][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 19:47:00.694][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 19:47:00.696][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:00.698][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:00.698][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 19:47:00.698][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 19:47:00.699][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 19:47:00.701][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.704][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:00.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:00.706][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:00.707][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:00.709][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:47:00.709][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 19:47:00.710][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.712][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.713][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:00.715][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:00.717][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 19:47:00.719][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:47:00.721][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:47:00.723][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:47:00.725][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:47:00.739][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:00.741][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 19:47:00.742][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:00.745][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:00.746][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:00.748][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:00.750][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 19:47:00.751][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 19:47:00.753][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:47:00.753][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 19:47:00.754][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:00.755][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:00.757][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 19:47:00.759][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 19:47:00.761][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:00.763][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:00.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:00.766][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:00.768][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:00.770][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:00.772][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 19:47:00.774][biodb::testThat]
biodb.INFO [2024-03-27 19:47:00.775][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-03-27 19:47:00.777][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:47:00.778][biodb::testThat]
biodb.DEBUG[2024-03-27 19:47:00.783][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:00.786][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:00.788][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:47:00.790][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:00.793][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:47:00.795][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:47:00.796][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:47:00.798][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:47:00.813][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:47:00.816][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-03-27 19:47:00.826][biodb::testThat]
biodb.INFO [2024-03-27 19:47:00.828][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-03-27 19:47:00.831][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:47:00.834][biodb::testThat]
biodb.DEBUG[2024-03-27 19:47:00.838][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-27 19:47:00.839][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:47:00.842][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:00.844][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:47:00.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-27 19:47:00.849][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 19:47:00.851][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-27 19:47:00.853][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:47:00.855][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:47:00.857][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:47:00.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:00.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:00.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:00.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:00.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:00.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:00.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:47:00.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:00.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:00.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.883][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.890][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:00.892][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:00.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.894][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.896][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:00.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.901][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:00.903][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:00.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.905][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.907][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:00.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.913][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:00.914][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:00.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.917][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:00.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:00.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.937][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:00.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:00.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.942][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:00.943][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:00.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.945][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:00.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:00.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.952][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:00.953][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:00.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.956][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:00.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:00.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.967][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:00.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:00.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.977][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.983][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:00.985][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:00.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.988][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:00.996][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:00.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:00.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.000][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:01.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:01.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:01.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:01.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.012][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:01.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:01.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.018][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.022][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.034][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.043][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.047][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.055][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:01.056][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:01.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:01.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:01.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:01.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:01.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.072][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:01.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:01.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.088][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:01.090][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:01.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.118][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.128][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:01.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.134][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:01.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:01.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:01.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:01.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:01.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:01.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:01.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:01.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:01.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:01.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.383][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.388][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:01.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:01.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.428][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:01.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:01.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:01.575][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-27 19:47:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-27 19:47:01.611][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 19:47:01.613][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 19:47:01.614][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 19:47:01.616][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 19:47:01.617][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:01.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:01.619][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:01.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:01.622][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 19:47:01.629][biodb::testContext]
biodb.INFO [2024-03-27 19:47:01.631][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:47:01.632][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-03-27 19:47:01.634][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-27 19:47:01.635][biodb::testContext]
biodb.INFO [2024-03-27 19:47:01.642][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:47:01.644][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-27 19:47:01.650][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:47:01.651][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-27 19:47:01.653][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.658][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-27 19:47:01.660][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.665][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-27 19:47:01.667][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.672][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-27 19:47:01.674][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-27 19:47:01.675][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-27 19:47:01.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.680][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-27 19:47:01.681][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-27 19:47:01.683][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.688][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-27 19:47:01.689][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-27 19:47:01.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.694][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-27 19:47:01.696][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-27 19:47:01.697][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-27 19:47:01.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.702][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-27 19:47:01.704][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.709][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-27 19:47:01.710][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-27 19:47:01.712][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-27 19:47:01.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.717][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:47:01.719][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-27 19:47:01.720][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-27 19:47:01.722][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-27 19:47:01.724][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-27 19:47:01.726][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-27 19:47:01.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.731][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-27 19:47:01.732][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-27 19:47:01.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.737][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-27 19:47:01.738][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-27 19:47:01.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.743][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-27 19:47:01.745][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-27 19:47:01.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.750][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-27 19:47:01.759][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-27 19:47:01.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.766][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-27 19:47:01.767][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-27 19:47:01.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.773][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-27 19:47:01.774][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-27 19:47:01.798][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-27 19:47:01.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.804][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-27 19:47:01.806][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-27 19:47:01.808][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-27 19:47:01.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.813][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-27 19:47:01.816][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.817][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-27 19:47:01.819][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.820][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:01.821][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.823][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.824][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.825][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.827][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:47:01.828][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:01.830][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.831][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-27 19:47:01.832][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:01.834][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.835][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.836][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:01.836][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:47:01.836][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:47:01.836][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:47:01.836][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:47:01.837][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:01.838][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.840][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.841][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:01.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.845][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.846][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.848][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:01.849][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:01.850][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.852][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.854][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-27 19:47:01.857][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.858][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:47:01.859][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.860][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:01.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.865][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.866][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.868][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:47:01.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:01.870][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.872][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-27 19:47:01.873][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:01.874][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.876][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.877][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:01.877][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-27 19:47:01.877][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-27 19:47:01.877][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-27 19:47:01.877][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-27 19:47:01.879][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:01.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:01.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.886][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.888][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.889][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:01.890][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:01.891][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.893][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.895][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-27 19:47:01.897][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.898][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-27 19:47:01.900][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.901][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:01.902][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.903][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.905][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.906][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.907][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-27 19:47:01.909][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:01.911][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.912][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-27 19:47:01.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:01.915][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.916][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.918][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.919][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:01.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.924][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:01.925][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.937][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.939][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:01.940][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:01.941][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.943][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.945][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-27 19:47:01.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.949][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-27 19:47:01.950][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.951][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:01.952][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.953][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.954][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.956][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.957][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-27 19:47:01.958][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:01.959][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.961][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-27 19:47:01.962][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:01.963][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.965][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:01.966][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.968][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-27 19:47:01.969][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.970][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.971][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:01.973][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:01.974][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:01.975][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:01.977][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.978][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:01.979][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:01.981][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:01.982][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:01.984][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:47:01.985][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:01.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:01.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:01.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:01.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:01.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:01.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:01.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.123][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-27 19:47:02.125][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-27 19:47:02.127][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-27 19:47:02.128][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-27 19:47:02.130][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-27 19:47:02.132][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:47:02.134][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-27 19:47:02.136][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-27 19:47:02.138][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-27 19:47:02.140][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:47:02.141][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:47:02.144][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-27 19:47:02.146][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-27 19:47:02.148][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-27 19:47:02.150][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-27 19:47:02.152][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:47:02.153][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-27 19:47:02.155][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-27 19:47:02.157][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-27 19:47:02.159][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-27 19:47:02.160][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-27 19:47:02.162][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-27 19:47:02.165][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-27 19:47:02.166][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-27 19:47:02.168][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-27 19:47:02.170][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-27 19:47:02.172][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-27 19:47:02.174][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-27 19:47:02.177][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-27 19:47:02.179][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-27 19:47:02.180][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-27 19:47:02.183][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-27 19:47:02.185][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-27 19:47:02.187][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-27 19:47:02.189][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-27 19:47:02.191][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-27 19:47:02.193][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-27 19:47:02.195][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-27 19:47:02.197][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-27 19:47:02.199][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-27 19:47:02.201][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-27 19:47:02.203][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-27 19:47:02.205][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-27 19:47:02.207][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-27 19:47:02.209][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-27 19:47:02.211][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-27 19:47:02.213][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-27 19:47:02.215][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-27 19:47:02.217][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-27 19:47:02.220][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-27 19:47:02.222][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-27 19:47:02.224][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-27 19:47:02.226][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-27 19:47:02.228][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-27 19:47:02.230][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-27 19:47:02.232][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-27 19:47:02.234][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-27 19:47:02.236][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-27 19:47:02.238][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-27 19:47:02.240][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-27 19:47:02.242][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-27 19:47:02.244][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-27 19:47:02.253][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-27 19:47:02.255][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-27 19:47:02.257][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-27 19:47:02.260][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-27 19:47:02.262][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-27 19:47:02.264][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-27 19:47:02.266][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-27 19:47:02.268][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-27 19:47:02.270][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-27 19:47:02.272][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-27 19:47:02.274][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-27 19:47:02.276][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-27 19:47:02.278][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-27 19:47:02.280][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-27 19:47:02.282][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-27 19:47:02.284][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-27 19:47:02.286][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-27 19:47:02.288][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-27 19:47:02.290][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-27 19:47:02.292][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-27 19:47:02.294][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-27 19:47:02.296][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-27 19:47:02.299][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-27 19:47:02.300][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-27 19:47:02.302][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.305][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-27 19:47:02.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:02.461][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-27 19:47:02.463][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:02.467][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:02.468][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-27 19:47:02.469][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:02.470][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-27 19:47:02.472][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:02.473][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-27 19:47:02.475][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:02.476][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-27 19:47:02.477][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-27 19:47:02.479][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-27 19:47:02.480][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:02.481][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-27 19:47:02.483][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-27 19:47:02.484][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-27 19:47:02.486][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-27 19:47:02.487][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-27 19:47:02.487][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-27 19:47:02.487][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-27 19:47:02.489][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-27 19:47:02.490][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:02.491][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:02.493][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-27 19:47:02.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-27 19:47:02.496][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-27 19:47:02.497][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-27 19:47:02.499][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:47:02.499][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-27 19:47:02.500][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:02.501][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:02.503][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-27 19:47:02.504][self$setPropertyValue]
biodb.DEBUG[2024-03-27 19:47:02.506][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-27 19:47:02.508][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-27 19:47:02.511][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-27 19:47:02.513][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-27 19:47:02.515][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-27 19:47:02.520][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:02.521][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-27 19:47:02.523][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:02.525][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:02.527][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:02.528][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:02.530][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-27 19:47:02.531][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-27 19:47:02.533][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-27 19:47:02.533][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-27 19:47:02.534][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-27 19:47:02.536][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-27 19:47:02.537][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-27 19:47:02.538][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-27 19:47:02.540][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-27 19:47:02.541][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:02.550][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:02.552][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:02.571][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-27 19:47:02.573][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-27 19:47:02.575][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-27 19:47:02.577][biodb::testThat]
biodb.INFO [2024-03-27 19:47:02.578][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-03-27 19:47:02.580][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-27 19:47:02.581][biodb::testThat]
biodb.DEBUG[2024-03-27 19:47:02.584][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 19:47:02.587][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-27 19:47:02.590][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-27 19:47:02.594][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:02.596][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:02.598][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:47:02.601][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:02.602][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:47:02.604][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:47:02.606][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:47:02.607][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:47:02.608][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:47:02.610][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:47:02.611][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-03-27 19:47:02.614][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-27 19:47:02.616][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:47:02.618][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:02.620][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:47:02.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-27 19:47:02.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 19:47:02.627][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-27 19:47:02.629][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:47:02.631][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:47:02.632][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:47:02.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:02.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:02.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:02.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:02.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:02.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:02.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:47:02.655][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:02.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:02.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.660][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.669][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:02.671][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.674][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.683][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.684][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.688][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.690][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.696][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.697][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.700][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.720][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.721][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.723][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:02.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:02.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:02.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:02.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:02.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.763][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.774][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.775][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.778][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.785][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:02.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:02.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.788][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:02.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:02.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:02.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.800][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:02.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:02.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.811][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:02.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:02.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.822][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:02.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.829][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:02.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:02.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.832][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.839][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:02.841][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:02.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.843][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.851][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:02.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:02.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.855][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.862][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:02.863][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:02.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.866][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:02.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:02.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:02.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.137][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.197][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:03.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:03.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:03.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.287][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:03.338][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-27 19:47:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:03.362][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:47:03.363][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:47:03.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:03.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:03.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:03.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:03.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:03.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:03.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:03.391][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-27 19:47:03.393][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-27 19:47:03.396][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:03.398][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-27 19:47:03.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-27 19:47:03.403][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-27 19:47:03.405][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-27 19:47:03.407][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-27 19:47:03.409][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-27 19:47:03.410][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-27 19:47:03.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:03.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:03.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:03.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:03.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:03.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:03.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:47:03.431][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.460][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.462][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.465][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.467][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:03.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.473][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.474][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.477][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.490][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.492][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.494][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.496][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.505][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.513][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.514][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.517][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.539][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.548][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.550][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.567][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.569][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.572][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.593][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.629][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.637][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.734][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.737][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.759][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.763][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.770][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.772][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.774][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.776][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:03.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:03.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.785][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:03.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.793][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:03.795][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-27 19:47:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:03.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:03.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-27 19:47:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.846][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.862][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-27 19:47:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-27 19:47:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-27 19:47:03.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-27 19:47:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-27 19:47:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-27 19:47:03.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-27 19:47:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-27 19:47:03.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-27 19:47:04.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-27 19:47:04.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-27 19:47:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-27 19:47:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-27 19:47:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.145][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-27 19:47:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:04.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:04.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:04.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:04.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-27 19:47:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-27 19:47:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.174][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.196][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-27 19:47:04.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-27 19:47:04.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-27 19:47:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-27 19:47:04.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.279][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.284][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.296][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-27 19:47:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-27 19:47:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-27 19:47:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.334][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-27 19:47:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.358][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:47:04.359][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:47:04.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:04.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:04.385][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 19:47:04.386][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-27 19:47:04.388][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-27 19:47:04.390][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.393][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.395][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:47:04.397][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.398][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:47:04.400][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:47:04.402][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:47:04.403][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:47:04.405][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:47:04.406][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:47:04.414][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:47:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.435][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.441][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.458][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:47:04.460][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:47:04.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:04.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:47:04.478][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.500][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.515][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-27 19:47:04.517][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:47:04.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:04.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-27 19:47:04.540][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-27 19:47:04.542][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-27 19:47:04.543][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-27 19:47:04.546][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.548][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.550][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-27 19:47:04.551][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-27 19:47:04.552][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-27 19:47:04.554][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-27 19:47:04.556][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-27 19:47:04.557][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-27 19:47:04.559][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-27 19:47:04.561][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-27 19:47:04.563][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-27 19:47:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.586][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.592][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.615][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-27 19:47:04.616][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-03-27 19:47:04.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:04.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-27 19:47:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-27 19:47:04.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-27 19:47:04.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-27 19:47:04.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-27 19:47:04.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-27 19:47:04.674][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-27 19:47:04.675][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-27 19:47:04.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-27 19:47:04.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-27 19:47:04.704][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-27 19:47:04.706][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-27 19:47:04.708][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-27 19:47:04.709][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-27 19:47:04.711][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-27 19:47:04.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-27 19:47:04.713][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-27 19:47:04.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-27 19:47:04.716][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-27 19:47:04.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 12.325   0.877  15.556

Example timings