Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-01-19 11:54:55 -0500 (Tue, 19 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE chipseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 289/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
chipseq 1.40.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||
nebbiolo1 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | ![]() | ||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | ![]() |
Package: chipseq |
Version: 1.40.0 |
Command: rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.40.0.tar.gz |
StartedAt: 2021-01-19 09:06:08 -0500 (Tue, 19 Jan 2021) |
EndedAt: 2021-01-19 09:06:57 -0500 (Tue, 19 Jan 2021) |
EllapsedTime: 49.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: chipseq_1.40.0.zip |
PackageFileSize: 2.246 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.40.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'chipseq' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rlesumprod.c -o rlesumprod.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/chipseq.buildbin-libdir/00LOCK-chipseq/00new/chipseq/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'chipseq' finding HTML links ... done chipseqFilter html coverageplot html cstest html diffPeakSummary html estimate.mean.fraglen html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpqu2BZF/R.INSTALL43b8b6273d3/chipseq/man/estimate.mean.fraglen.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic islandDepthPlot html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpqu2BZF/R.INSTALL43b8b6273d3/chipseq/man/islandDepthPlot.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic laneSubsample html peakCutoff html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmpqu2BZF/R.INSTALL43b8b6273d3/chipseq/man/peakCutoff.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic peakSummary-methods html subsetSummary html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'chipseq' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rlesumprod.c -o rlesumprod.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'chipseq' as chipseq_1.40.0.zip * DONE (chipseq)