Back to Multiple platform build/check report for BioC 3.12
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for chipseq on merida1

This page was generated on 2020-10-27 12:03:10 -0400 (Tue, 27 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE chipseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 289/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.39.0
Bioconductor Package Maintainer
Snapshot Date: 2020-10-26 14:42:55 -0400 (Mon, 26 Oct 2020)
URL: https://git.bioconductor.org/packages/chipseq
Branch: master
Last Commit: 5ce3042
Last Changed Date: 2020-04-27 14:19:32 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  WARNINGS  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: chipseq
Version: 1.39.0
Command: rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chipseq_1.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chipseq.buildbin-libdir
StartedAt: 2020-10-27 08:08:39 -0400 (Tue, 27 Oct 2020)
EndedAt: 2020-10-27 08:09:48 -0400 (Tue, 27 Oct 2020)
EllapsedTime: 69.8 seconds
RetCode: 0
Status:  OK 
PackageFile: chipseq_1.39.0.tgz
PackageFileSize: 2.204 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh chipseq_1.39.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R chipseq.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=chipseq.buildbin-libdir chipseq_1.39.0.tar.gz'
>>>>>>> 

* installing *source* package ‘chipseq’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c rlesumprod.c -o rlesumprod.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o chipseq.so rlesumprod.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/chipseq.buildbin-libdir/00LOCK-chipseq/00new/chipseq/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (chipseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR chipseq.buildbin-libdir/chipseq/libs/chipseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "chipseq.buildbin-libdir/chipseq/libs/chipseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "chipseq.buildbin-libdir/chipseq/libs/chipseq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "chipseq.buildbin-libdir/chipseq/libs/chipseq.so"