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BUILD BIN report for bacon on merida1

This page was generated on 2020-08-11 11:58:39 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE bacon PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 101/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bacon 1.17.0
Maarten van Iterson
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/bacon
Branch: master
Last Commit: 8c61588
Last Changed Date: 2020-04-27 14:55:31 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: bacon
Version: 1.17.0
Command: rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.17.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
StartedAt: 2020-08-11 07:23:25 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 07:24:16 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 51.1 seconds
RetCode: 0
Status:  OK 
PackageFile: bacon_1.17.0.tgz
PackageFileSize: 626.1 KiB

Command output

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###
### Running command:
###
###   rm -rf bacon.buildbin-libdir && mkdir bacon.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh bacon_1.17.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R bacon.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=bacon.buildbin-libdir bacon_1.17.0.tar.gz'
>>>>>>> 

* installing *source* package ‘bacon’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rinit.c -o Rinit.o
Rinit.c:11:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
  NULL
  ^~~~
  {   }
/Library/Developer/CommandLineTools/usr/lib/clang/11.0.0/include/stddef.h:105:16: note: expanded from macro 'NULL'
#  define NULL ((void*)0)
               ^~~~~~~~~~
1 warning generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c bacon.c -o bacon.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bacon.so Rinit.o bacon.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/bacon.buildbin-libdir/00LOCK-bacon/00new/bacon/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bacon)


>>>>>>> 
>>>>>>> FIXING LINKS FOR bacon.buildbin-libdir/bacon/libs/bacon.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "bacon.buildbin-libdir/bacon/libs/bacon.so"