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CHECK report for BrowserViz on tokay1

This page was generated on 2020-09-21 11:13:32 -0400 (Mon, 21 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BrowserViz PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 203/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BrowserViz 2.11.0
Paul Shannon
Snapshot Date: 2020-09-20 14:41:51 -0400 (Sun, 20 Sep 2020)
URL: https://git.bioconductor.org/packages/BrowserViz
Branch: master
Last Commit: c965f73
Last Changed Date: 2020-04-27 14:47:02 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  TIMEOUT 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BrowserViz
Version: 2.11.0
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BrowserViz.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BrowserViz_2.11.0.tar.gz
StartedAt: 2020-09-21 02:28:29 -0400 (Mon, 21 Sep 2020)
EndedAt: 2020-09-21 02:29:19 -0400 (Mon, 21 Sep 2020)
EllapsedTime: 49.7 seconds
RetCode: 0
Status:  OK  
CheckDir: BrowserViz.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BrowserViz.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BrowserViz_2.11.0.tar.gz
###
##############################################################################
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BrowserViz.Rcheck'
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BrowserViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BrowserViz' version '2.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BrowserViz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking include directives in Makefiles ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

BrowserViz.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BrowserViz_2.11.0.tar.gz && rm -rf BrowserViz.buildbin-libdir && mkdir BrowserViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BrowserViz.buildbin-libdir BrowserViz_2.11.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BrowserViz_2.11.0.zip && rm BrowserViz_2.11.0.tar.gz BrowserViz_2.11.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  137k  100  137k    0     0  5093k      0 --:--:-- --:--:-- --:--:-- 5957k

install for i386

* installing *source* package 'BrowserViz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BrowserViz'
    finding HTML links ... done
    BrowserViz-class                        html  
    BrowserViz                              html  
    addRMessageHandler                      html  
    browserResponseReady                    html  
    closeWebSocket                          html  
    dispatchMessage                         html  
    displayHTMLInDiv                        html  
    fromJSON                                html  
    getBrowserInfo                          html  
    getBrowserResponse                      html  
    getBrowserWindowSize                    html  
    getBrowserWindowTitle                   html  
    handleResponse                          html  
    port                                    html  
    ready                                   html  
    roundTripTest                           html  
    send                                    html  
    setBrowserWindowTitle                   html  
    show                                    html  
    toJSON                                  html  
    wait                                    html  
    webBrowserAvailableForTesting           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BrowserViz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BrowserViz' as BrowserViz_2.11.0.zip
* DONE (BrowserViz)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BrowserViz' successfully unpacked and MD5 sums checked

Tests output

BrowserViz.Rcheck/tests_i386/runTests.Rout


R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BrowserViz")

Attaching package: 'BrowserViz'

The following objects are masked from 'package:jsonlite':

    fromJSON, toJSON

--- checkGetBrowserInfo
--- checkWindowTitle
--- checkGetWindowSize
--- check_roundTrips


RUNIT TEST PROTOCOL -- Mon Sep 21 02:29:11 2020 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BrowserViz RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   0.70    0.07    0.76 

BrowserViz.Rcheck/tests_x64/runTests.Rout


R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("BrowserViz")

Attaching package: 'BrowserViz'

The following objects are masked from 'package:jsonlite':

    fromJSON, toJSON

--- checkGetBrowserInfo
--- checkWindowTitle
--- checkGetWindowSize
--- check_roundTrips


RUNIT TEST PROTOCOL -- Mon Sep 21 02:29:12 2020 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
BrowserViz RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
   0.73    0.06    0.78 

Example timings

BrowserViz.Rcheck/examples_i386/BrowserViz-Ex.timings

nameusersystemelapsed
fromJSON000
toJSON0.070.000.06

BrowserViz.Rcheck/examples_x64/BrowserViz-Ex.timings

nameusersystemelapsed
fromJSON0.020.000.01
toJSON0.060.000.06