Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for BioTIP on merida1

This page was generated on 2020-08-10 12:45:09 -0400 (Mon, 10 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BioTIP PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 178/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioTIP 1.3.0
Zhezhen Wang , X Holly Yang < xyang2@uchicago> and Yuxi (Jennifer) Sun
Snapshot Date: 2020-08-09 14:51:29 -0400 (Sun, 09 Aug 2020)
URL: https://git.bioconductor.org/packages/BioTIP
Branch: master
Last Commit: 8fc1000
Last Changed Date: 2020-08-07 14:59:14 -0400 (Fri, 07 Aug 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida1 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: BioTIP
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioTIP
StartedAt: 2020-08-09 21:34:03 -0400 (Sun, 09 Aug 2020)
EndedAt: 2020-08-09 21:34:21 -0400 (Sun, 09 Aug 2020)
EllapsedTime: 17.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioTIP
###
##############################################################################
##############################################################################


* checking for file ‘BioTIP/DESCRIPTION’ ... OK
* preparing ‘BioTIP’:
* checking DESCRIPTION meta-information ... OK
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:40: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:52: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:55: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:58: unexpected section header '\value'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:63: unexpected section header '\description'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:68: unexpected section header '\examples'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:78: unexpected section header '\seealso'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:81: unexpected section header '\author'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/optimize.sd_selection.Rd:84: unexpected END_OF_INPUT '
'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:29: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:41: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:44: unknown macro '\item'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:47: unexpected section header '\value'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:54: unexpected section header '\description'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:61: unexpected section header '\examples'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:71: unexpected section header '\seealso'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:74: unexpected section header '\author'
Warning: /private/tmp/RtmpvHXVO6/Rbuild104523513744e/BioTIP/man/sd_selection.Rd:77: unexpected END_OF_INPUT '
'
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BioTIP.Rmd’ using rmarkdown
Quitting from lines 64-70 (BioTIP.Rmd) 
Error: processing vignette 'BioTIP.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘BioTIP.Rmd’

SUMMARY: processing the following file failed:
  ‘BioTIP.Rmd’

Error: Vignette re-building failed.
Execution halted