Back to Multiple platform build/check report for BioC 3.12
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for AnnotationForge on merida1

This page was generated on 2021-01-22 11:57:42 -0500 (Fri, 22 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE AnnotationForge PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 64/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.32.0
Bioconductor Package Maintainer
Snapshot Date: 2021-01-21 14:42:12 -0500 (Thu, 21 Jan 2021)
URL: https://git.bioconductor.org/packages/AnnotationForge
Branch: RELEASE_3_12
Last Commit: 3d17c2a
Last Changed Date: 2020-10-27 10:46:13 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: AnnotationForge
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2021-01-21 18:07:28 -0500 (Thu, 21 Jan 2021)
EndedAt: 2021-01-21 18:10:37 -0500 (Thu, 21 Jan 2021)
EllapsedTime: 188.9 seconds
RetCode: 0
Status:  OK 
PackageFile: AnnotationForge_1.32.0.tar.gz
PackageFileSize: 3.734 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
###
##############################################################################
##############################################################################


* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSIS.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/ARABIDOPSISCHIP.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/BASEPKG.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/COELICOLOR.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/GO.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/INPARANOID.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/KEGG.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/MALARIA.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/NCBICHIP.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/NCBIORG.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/NOCHIPSCHEMA.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/NOSCHEMA.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/ORGANISM.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/PFAM.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/YEAST.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/YEASTCHIP.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/AnnDbPkg-templates/YEASTNCBI.DB/inst/extdata’ is empty
WARNING: directory ‘AnnotationForge/inst/ProbePkg-template/data’ is empty
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in  serialize/load version 3 cannot be read in older versions of R.  File(s) containing such objects:  ‘AnnotationForge/inst/extdata/viableIDs.rda’
* building ‘AnnotationForge_1.32.0.tar.gz’