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BUILD report for AnnotationForge on merida1

This page was generated on 2021-04-17 12:10:12 -0400 (Sat, 17 Apr 2021).

To the developers/maintainers of the AnnotationForge package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 64/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnnotationForge 1.32.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-04-16 14:50:12 -0400 (Fri, 16 Apr 2021)
URL: https://git.bioconductor.org/packages/AnnotationForge
Branch: RELEASE_3_12
Last Commit: 3d17c2a
Last Changed Date: 2020-10-27 10:46:13 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    ERROR  skipped
tokay1Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AnnotationForge
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
StartedAt: 2021-04-16 18:06:24 -0400 (Fri, 16 Apr 2021)
EndedAt: 2021-04-16 18:09:39 -0400 (Fri, 16 Apr 2021)
EllapsedTime: 194.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationForge
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* checking for file ‘AnnotationForge/DESCRIPTION’ ... OK
* preparing ‘AnnotationForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MakingNewAnnotationPackages.Rnw’ using knitr
trying URL 'http://www.uniprot.org/uniprot/?query=P13368+or+Q6GZX4&format=xml'
downloaded 38 KB

--- finished re-building ‘MakingNewAnnotationPackages.Rnw’

--- re-building ‘MakingNewOrganismPackages.Rmd’ using knitr
Error: processing vignette 'MakingNewOrganismPackages.Rmd' failed with diagnostics:
The 'markdown' package should be declared as a dependency of the 'AnnotationForge' package (e.g., in the  'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'markdown' package. Please see https://github.com/yihui/knitr/issues/1864 for more information.
--- failed re-building ‘MakingNewOrganismPackages.Rmd’

--- re-building ‘SQLForge.Rnw’ using knitr
--- finished re-building ‘SQLForge.Rnw’

--- re-building ‘makeProbePackage.Rnw’ using knitr
Warning: call dbDisconnect() when finished working with a connection

See
  ‘/private/tmp/RtmplKrcZq/hgu95av2probe.Rcheck/00check.log’
for details.


--- finished re-building ‘makeProbePackage.Rnw’

SUMMARY: processing the following file failed:
  ‘MakingNewOrganismPackages.Rmd’

Error: Vignette re-building failed.
Execution halted