Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:41:22 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2005/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
spatialDE 1.9.1 (landing page) Gabriele Sales
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the spatialDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: spatialDE |
Version: 1.9.1 |
Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings spatialDE_1.9.1.tar.gz |
StartedAt: 2024-03-28 09:52:39 -0000 (Thu, 28 Mar 2024) |
EndedAt: 2024-03-28 09:58:21 -0000 (Thu, 28 Mar 2024) |
EllapsedTime: 341.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: spatialDE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings spatialDE_1.9.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck’ * using R Under development (unstable) (2024-03-19 r86153) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 10.3.1 GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘spatialDE/DESCRIPTION’ ... OK * this is package ‘spatialDE’ version ‘1.9.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spatialDE’ can be installed ... NOTE Found the following notes/warnings: Non-staged installation was used See ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed spatial_patterns 23.316 0.019 23.384 FSV_sig 6.833 0.573 8.623 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00check.log’ for details.
spatialDE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL spatialDE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library’ * installing *source* package ‘spatialDE’ ... ** using non-staged installation via StagedInstall field ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (spatialDE)
spatialDE.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(spatialDE) > > test_check("spatialDE") Loading required package: SingleCellExperiment Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: GenomicRanges Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 29%|██▉ | 29/100 [00:00<00:00, 289.22it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 272.42it/s][A 86%|████████▌ | 86/100 [00:00<00:00, 272.42it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.66it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 207.70it/s][A 43%|████▎ | 43/100 [00:00<00:00, 193.03it/s][A 63%|██████▎ | 63/100 [00:00<00:00, 189.90it/s][A 83%|████████▎ | 83/100 [00:00<00:00, 189.35it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.15it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 208.99it/s][A 42%|████▏ | 42/100 [00:00<00:00, 184.68it/s][A 61%|██████ | 61/100 [00:00<00:00, 179.74it/s][A 80%|████████ | 80/100 [00:00<00:00, 176.79it/s][A 98%|█████████▊| 98/100 [00:00<00:00, 172.09it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.95it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 185.49it/s][A 38%|███▊ | 38/100 [00:00<00:00, 178.11it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 174.60it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 170.61it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 166.25it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.83it/s] 0%| | 0/100 [00:00<?, ?it/s][A 17%|█▋ | 17/100 [00:00<00:00, 169.14it/s][A 34%|███▍ | 34/100 [00:00<00:00, 169.33it/s][A 51%|█████ | 51/100 [00:00<00:00, 164.53it/s][A 68%|██████▊ | 68/100 [00:00<00:00, 164.90it/s][A 85%|████████▌ | 85/100 [00:00<00:00, 165.26it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.76it/s] 0%| | 0/100 [00:00<?, ?it/s][A 18%|█▊ | 18/100 [00:00<00:00, 174.43it/s][A 36%|███▌ | 36/100 [00:00<00:00, 172.96it/s][A 54%|█████▍ | 54/100 [00:00<00:00, 168.37it/s][A 72%|███████▏ | 72/100 [00:00<00:00, 172.03it/s][A 90%|█████████ | 90/100 [00:00<00:00, 169.69it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.73it/s] 0%| | 0/100 [00:00<?, ?it/s][A 18%|█▊ | 18/100 [00:00<00:00, 179.03it/s][A 36%|███▌ | 36/100 [00:00<00:00, 178.45it/s][A 54%|█████▍ | 54/100 [00:00<00:00, 169.78it/s][A 73%|███████▎ | 73/100 [00:00<00:00, 175.95it/s][A 91%|█████████ | 91/100 [00:00<00:00, 175.01it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.72it/s] 0%| | 0/100 [00:00<?, ?it/s][A 19%|█▉ | 19/100 [00:00<00:00, 180.96it/s][A 38%|███▊ | 38/100 [00:00<00:00, 178.19it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 173.46it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 175.03it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 176.12it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.73it/s] 0%| | 0/100 [00:00<?, ?it/s][A 16%|█▌ | 16/100 [00:00<00:00, 120.24it/s][A 36%|███▌ | 36/100 [00:00<00:00, 158.59it/s][A 55%|█████▌ | 55/100 [00:00<00:00, 170.21it/s][A 75%|███████▌ | 75/100 [00:00<00:00, 179.76it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 183.40it/s][A [A Models: 90%|█████████ | 9/10 [00:05<00:00, 1.73it/s] 0%| | 0/100 [00:00<?, ?it/s][A 24%|██▍ | 24/100 [00:00<00:00, 232.76it/s][A 48%|████▊ | 48/100 [00:00<00:00, 214.66it/s][A 70%|███████ | 70/100 [00:00<00:00, 211.33it/s][A 92%|█████████▏| 92/100 [00:00<00:00, 204.85it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.82it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.82it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 29%|██▉ | 29/100 [00:00<00:00, 288.41it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 266.32it/s][A 85%|████████▌ | 85/100 [00:00<00:00, 260.48it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.60it/s] 0%| | 0/100 [00:00<?, ?it/s][A 24%|██▍ | 24/100 [00:00<00:00, 233.59it/s][A 48%|████▊ | 48/100 [00:00<00:00, 193.58it/s][A 68%|██████▊ | 68/100 [00:00<00:00, 192.58it/s][A 88%|████████▊ | 88/100 [00:00<00:00, 189.10it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.14it/s] 0%| | 0/100 [00:00<?, ?it/s][A 23%|██▎ | 23/100 [00:00<00:00, 222.30it/s][A 46%|████▌ | 46/100 [00:00<00:00, 182.87it/s][A 65%|██████▌ | 65/100 [00:00<00:00, 178.78it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 177.04it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 1.96it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 207.10it/s][A 42%|████▏ | 42/100 [00:00<00:00, 174.39it/s][A 60%|██████ | 60/100 [00:00<00:00, 168.49it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 168.92it/s][A 96%|█████████▌| 96/100 [00:00<00:00, 169.82it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.85it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 205.23it/s][A 42%|████▏ | 42/100 [00:00<00:00, 172.62it/s][A 60%|██████ | 60/100 [00:00<00:00, 168.53it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 168.77it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 167.04it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.79it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 214.15it/s][A 44%|████▍ | 44/100 [00:00<00:00, 185.48it/s][A 63%|██████▎ | 63/100 [00:00<00:00, 177.71it/s][A 81%|████████ | 81/100 [00:00<00:00, 174.07it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 172.11it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.78it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 211.93it/s][A 44%|████▍ | 44/100 [00:00<00:00, 181.98it/s][A 63%|██████▎ | 63/100 [00:00<00:00, 176.31it/s][A 81%|████████ | 81/100 [00:00<00:00, 173.71it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 171.98it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.77it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 200.84it/s][A 42%|████▏ | 42/100 [00:00<00:00, 177.91it/s][A 60%|██████ | 60/100 [00:00<00:00, 173.96it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 174.16it/s][A 96%|█████████▌| 96/100 [00:00<00:00, 174.49it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.76it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 209.88it/s][A 43%|████▎ | 43/100 [00:00<00:00, 185.48it/s][A 62%|██████▏ | 62/100 [00:00<00:00, 181.24it/s][A 81%|████████ | 81/100 [00:00<00:00, 179.76it/s][A 100%|██████████| 100/100 [00:00<00:00, 181.06it/s][A [A Models: 90%|█████████ | 9/10 [00:04<00:00, 1.78it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 206.68it/s][A 42%|████▏ | 42/100 [00:00<00:00, 186.93it/s][A 61%|██████ | 61/100 [00:00<00:00, 184.92it/s][A 80%|████████ | 80/100 [00:00<00:00, 184.51it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 185.13it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.80it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.83it/s] /home/biocbuild/.cache/R/basilisk/1.15.5/spatialDE/1.9.1/env/lib/python3.9/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log result = func(self.values, **kwargs) Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 28%|██▊ | 28/100 [00:00<00:00, 270.70it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 272.06it/s][A 85%|████████▌ | 85/100 [00:00<00:00, 274.74it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.74it/s] 0%| | 0/100 [00:00<?, ?it/s][A 24%|██▍ | 24/100 [00:00<00:00, 233.49it/s][A 48%|████▊ | 48/100 [00:00<00:00, 215.73it/s][A 70%|███████ | 70/100 [00:00<00:00, 207.78it/s][A 91%|█████████ | 91/100 [00:00<00:00, 205.63it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.30it/s] 0%| | 0/100 [00:00<?, ?it/s][A 22%|██▏ | 22/100 [00:00<00:00, 217.20it/s][A 44%|████▍ | 44/100 [00:00<00:00, 197.09it/s][A 64%|██████▍ | 64/100 [00:00<00:00, 187.40it/s][A 83%|████████▎ | 83/100 [00:00<00:00, 182.91it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 2.09it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.56it/s][A 41%|████ | 41/100 [00:00<00:00, 139.05it/s][A 59%|█████▉ | 59/100 [00:00<00:00, 152.69it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 165.30it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 172.83it/s][A [A Models: 40%|████ | 4/10 [00:01<00:03, 1.89it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 204.82it/s][A 42%|████▏ | 42/100 [00:00<00:00, 188.72it/s][A 61%|██████ | 61/100 [00:00<00:00, 181.18it/s][A 80%|████████ | 80/100 [00:00<00:00, 181.83it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 184.19it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.87it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 201.81it/s][A 42%|████▏ | 42/100 [00:00<00:00, 185.54it/s][A 61%|██████ | 61/100 [00:00<00:00, 176.35it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 172.78it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 174.30it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.83it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 192.07it/s][A 40%|████ | 40/100 [00:00<00:00, 178.32it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 172.33it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 171.47it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 172.91it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.79it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.18it/s][A 40%|████ | 40/100 [00:00<00:00, 178.35it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 172.73it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 172.06it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 172.09it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.77it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 200.59it/s][A 42%|████▏ | 42/100 [00:00<00:00, 182.04it/s][A 61%|██████ | 61/100 [00:00<00:00, 174.54it/s][A 79%|███████▉ | 79/100 [00:00<00:00, 174.36it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 173.98it/s][A [A Models: 90%|█████████ | 9/10 [00:04<00:00, 1.77it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 192.14it/s][A 40%|████ | 40/100 [00:00<00:00, 190.81it/s][A 60%|██████ | 60/100 [00:00<00:00, 192.05it/s][A 80%|████████ | 80/100 [00:00<00:00, 189.90it/s][A 100%|██████████| 100/100 [00:00<00:00, 191.36it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.80it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.87it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 27%|██▋ | 27/100 [00:00<00:00, 264.04it/s][A 54%|█████▍ | 54/100 [00:00<00:00, 258.43it/s][A 81%|████████ | 81/100 [00:00<00:00, 261.98it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.63it/s] 0%| | 0/100 [00:00<?, ?it/s][A 23%|██▎ | 23/100 [00:00<00:00, 225.21it/s][A 46%|████▌ | 46/100 [00:00<00:00, 208.80it/s][A 67%|██████▋ | 67/100 [00:00<00:00, 199.88it/s][A 88%|████████▊ | 88/100 [00:00<00:00, 196.47it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.21it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 206.66it/s][A 42%|████▏ | 42/100 [00:00<00:00, 188.77it/s][A 61%|██████ | 61/100 [00:00<00:00, 178.58it/s][A 80%|████████ | 80/100 [00:00<00:00, 180.51it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 181.97it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 2.01it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.76it/s][A 40%|████ | 40/100 [00:00<00:00, 175.71it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 171.22it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 174.37it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 173.38it/s][A [A Models: 40%|████ | 4/10 [00:02<00:03, 1.89it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 193.46it/s][A 40%|████ | 40/100 [00:00<00:00, 175.49it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 172.28it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 172.59it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 175.02it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.84it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 195.00it/s][A 40%|████ | 40/100 [00:00<00:00, 177.51it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 173.89it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 173.20it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 175.45it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.80it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.67it/s][A 41%|████ | 41/100 [00:00<00:00, 186.12it/s][A 60%|██████ | 60/100 [00:00<00:00, 178.47it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 176.92it/s][A 97%|█████████▋| 97/100 [00:00<00:00, 179.28it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.80it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 203.24it/s][A 42%|████▏ | 42/100 [00:00<00:00, 187.48it/s][A 61%|██████ | 61/100 [00:00<00:00, 180.37it/s][A 80%|████████ | 80/100 [00:00<00:00, 178.07it/s][A 99%|█████████▉| 99/100 [00:00<00:00, 179.58it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.80it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 209.55it/s][A 42%|████▏ | 42/100 [00:00<00:00, 189.06it/s][A 62%|██████▏ | 62/100 [00:00<00:00, 181.53it/s][A 81%|████████ | 81/100 [00:00<00:00, 179.29it/s][A 100%|██████████| 100/100 [00:00<00:00, 179.15it/s][A [A Models: 90%|█████████ | 9/10 [00:04<00:00, 1.80it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 195.58it/s][A 40%|████ | 40/100 [00:00<00:00, 196.06it/s][A 60%|██████ | 60/100 [00:00<00:00, 190.53it/s][A 80%|████████ | 80/100 [00:00<00:00, 188.57it/s][A 100%|██████████| 100/100 [00:00<00:00, 189.50it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.83it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.87it/s] Models: 0%| | 0/10 [00:00<?, ?it/s] 0%| | 0/100 [00:00<?, ?it/s][A 28%|██▊ | 28/100 [00:00<00:00, 267.76it/s][A 56%|█████▌ | 56/100 [00:00<00:00, 268.45it/s][A 84%|████████▍ | 84/100 [00:00<00:00, 272.15it/s][A [A Models: 10%|█ | 1/10 [00:00<00:03, 2.69it/s] 0%| | 0/100 [00:00<?, ?it/s][A 24%|██▍ | 24/100 [00:00<00:00, 224.58it/s][A 47%|████▋ | 47/100 [00:00<00:00, 208.63it/s][A 68%|██████▊ | 68/100 [00:00<00:00, 201.73it/s][A 89%|████████▉ | 89/100 [00:00<00:00, 192.83it/s][A [A Models: 20%|██ | 2/10 [00:00<00:03, 2.21it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 207.95it/s][A 42%|████▏ | 42/100 [00:00<00:00, 190.67it/s][A 62%|██████▏ | 62/100 [00:00<00:00, 182.00it/s][A 81%|████████ | 81/100 [00:00<00:00, 180.35it/s][A 100%|██████████| 100/100 [00:00<00:00, 183.28it/s][A [A Models: 30%|███ | 3/10 [00:01<00:03, 2.02it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 199.14it/s][A 41%|████ | 41/100 [00:00<00:00, 179.28it/s][A 60%|██████ | 60/100 [00:00<00:00, 174.83it/s][A 78%|███████▊ | 78/100 [00:00<00:00, 175.25it/s][A 96%|█████████▌| 96/100 [00:00<00:00, 173.51it/s][A [A Models: 40%|████ | 4/10 [00:01<00:03, 1.91it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 195.12it/s][A 40%|████ | 40/100 [00:00<00:00, 173.86it/s][A 58%|█████▊ | 58/100 [00:00<00:00, 169.91it/s][A 76%|███████▌ | 76/100 [00:00<00:00, 169.93it/s][A 94%|█████████▍| 94/100 [00:00<00:00, 172.40it/s][A [A Models: 50%|█████ | 5/10 [00:02<00:02, 1.83it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 188.76it/s][A 39%|███▉ | 39/100 [00:00<00:00, 171.13it/s][A 57%|█████▋ | 57/100 [00:00<00:00, 166.48it/s][A 74%|███████▍ | 74/100 [00:00<00:00, 164.79it/s][A 91%|█████████ | 91/100 [00:00<00:00, 166.51it/s][A [A Models: 60%|██████ | 6/10 [00:03<00:02, 1.78it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 198.61it/s][A 40%|████ | 40/100 [00:00<00:00, 183.63it/s][A 59%|█████▉ | 59/100 [00:00<00:00, 175.17it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 172.89it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 174.59it/s][A [A Models: 70%|███████ | 7/10 [00:03<00:01, 1.77it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 199.09it/s][A 40%|████ | 40/100 [00:00<00:00, 180.90it/s][A 59%|█████▉ | 59/100 [00:00<00:00, 173.63it/s][A 77%|███████▋ | 77/100 [00:00<00:00, 171.55it/s][A 95%|█████████▌| 95/100 [00:00<00:00, 172.17it/s][A [A Models: 80%|████████ | 8/10 [00:04<00:01, 1.76it/s] 0%| | 0/100 [00:00<?, ?it/s][A 21%|██ | 21/100 [00:00<00:00, 209.71it/s][A 42%|████▏ | 42/100 [00:00<00:00, 191.03it/s][A 62%|██████▏ | 62/100 [00:00<00:00, 183.34it/s][A 81%|████████ | 81/100 [00:00<00:00, 180.54it/s][A 100%|██████████| 100/100 [00:00<00:00, 179.92it/s][A [A Models: 90%|█████████ | 9/10 [00:04<00:00, 1.78it/s] 0%| | 0/100 [00:00<?, ?it/s][A 20%|██ | 20/100 [00:00<00:00, 197.12it/s][A 40%|████ | 40/100 [00:00<00:00, 196.80it/s][A 60%|██████ | 60/100 [00:00<00:00, 194.91it/s][A 80%|████████ | 80/100 [00:00<00:00, 191.26it/s][A 100%|██████████| 100/100 [00:00<00:00, 191.65it/s][A [A Models: 100%|██████████| 10/10 [00:05<00:00, 1.82it/s] Models: 100%|██████████| 10/10 [00:05<00:00, 1.85it/s] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ] > > proc.time() user system elapsed 73.724 0.959 74.647
spatialDE.Rcheck/spatialDE-Ex.timings
name | user | system | elapsed | |
FSV_sig | 6.833 | 0.573 | 8.623 | |
mockSVG | 0.413 | 0.036 | 0.450 | |
modelSearch | 2.710 | 0.052 | 2.767 | |
model_search | 2.271 | 0.024 | 2.299 | |
multiGenePlots | 3.275 | 0.128 | 3.409 | |
regress_out | 0.206 | 0.016 | 0.222 | |
run | 1.179 | 0.024 | 1.205 | |
spatialDE | 1.376 | 0.048 | 1.426 | |
spatialPatterns | 1.311 | 0.036 | 1.352 | |
spatial_patterns | 23.316 | 0.019 | 23.384 | |
stabilize | 0.135 | 0.024 | 0.159 | |