Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-04-29 11:41:22 -0400 (Mon, 29 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4752 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4518 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4475 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1923/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scTensor 2.13.1 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the scTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: scTensor |
Version: 2.13.1 |
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor |
StartedAt: 2024-04-29 02:11:14 -0000 (Mon, 29 Apr 2024) |
EndedAt: 2024-04-29 02:13:12 -0000 (Mon, 29 Apr 2024) |
EllapsedTime: 118.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor ### ############################################################################## ############################################################################## * checking for file ‘scTensor/DESCRIPTION’ ... OK * preparing ‘scTensor’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘scTensor.Rmd’ using rmarkdown Quitting from lines at lines 68-71 [AHub1] (scTensor.Rmd) Error: processing vignette 'scTensor.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub filename: annotationhub.index.rds --- failed re-building ‘scTensor.Rmd’ --- re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ using rmarkdown Quitting from lines at lines 152-164 [Ensembl with AnnotationHub] (scTensor_1_Data_format_ID_Conversion.Rmd) Error: processing vignette 'scTensor_1_Data_format_ID_Conversion.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub filename: annotationhub.index.rds --- failed re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ --- re-building ‘scTensor_2_Report_Interpretation.Rmd’ using rmarkdown --- finished re-building ‘scTensor_2_Report_Interpretation.Rmd’ --- re-building ‘scTensor_3_CCI_Simulation.Rmd’ using rmarkdown --- finished re-building ‘scTensor_3_CCI_Simulation.Rmd’ --- re-building ‘scTensor_4_Reanalysis.Rmd’ using rmarkdown --- finished re-building ‘scTensor_4_Reanalysis.Rmd’ SUMMARY: processing the following files failed: ‘scTensor.Rmd’ ‘scTensor_1_Data_format_ID_Conversion.Rmd’ Error: Vignette re-building failed. Execution halted