Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-03-04 11:39:48 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4676 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4441 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4417 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1701/2251 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
regutools 1.15.0 (landing page) Joselyn Chavez
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the regutools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regutools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: regutools |
Version: 1.15.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:regutools.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings regutools_1.15.0.tar.gz |
StartedAt: 2024-03-02 09:18:28 -0500 (Sat, 02 Mar 2024) |
EndedAt: 2024-03-02 09:36:05 -0500 (Sat, 02 Mar 2024) |
EllapsedTime: 1057.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: regutools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:regutools.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings regutools_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/regutools.Rcheck’ * using R Under development (unstable) (2024-01-16 r85808) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘regutools/DESCRIPTION’ ... OK * this is package ‘regutools’ version ‘1.15.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘regutools’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_dna_objects 15.438 0.767 19.147 build_condition 7.957 1.103 15.698 convert_to_biostrings 8.081 0.774 10.928 convert_to_granges 6.793 0.704 9.527 get_regulatory_summary 6.793 0.553 9.154 get_dataset 6.604 0.603 8.826 get_dna_objects 6.542 0.523 8.571 get_gene_regulators 6.416 0.517 8.406 connect_database 6.309 0.567 8.362 regulondb 6.185 0.665 8.179 get_regulatory_network 6.312 0.524 11.464 get_binding_sites 6.304 0.525 8.216 get_gene_synonyms 6.255 0.502 10.446 guess_id 6.224 0.511 8.234 list_attributes 6.191 0.520 8.163 list_datasets 6.171 0.480 7.921 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
regutools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL regutools ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘regutools’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (regutools)
regutools.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("regutools") > > test_check("regutools") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ] Warning message: call dbDisconnect() when finished working with a connection > > proc.time() user system elapsed 140.084 10.750 183.924
regutools.Rcheck/regutools-Ex.timings
name | user | system | elapsed | |
build_condition | 7.957 | 1.103 | 15.698 | |
connect_database | 6.309 | 0.567 | 8.362 | |
convert_to_biostrings | 8.081 | 0.774 | 10.928 | |
convert_to_granges | 6.793 | 0.704 | 9.527 | |
existing_intervals | 0.001 | 0.001 | 0.003 | |
existing_partial_match | 0.001 | 0.001 | 0.002 | |
get_binding_sites | 6.304 | 0.525 | 8.216 | |
get_dataset | 6.604 | 0.603 | 8.826 | |
get_dna_objects | 6.542 | 0.523 | 8.571 | |
get_gene_regulators | 6.416 | 0.517 | 8.406 | |
get_gene_synonyms | 6.255 | 0.502 | 10.446 | |
get_regulatory_network | 6.312 | 0.524 | 11.464 | |
get_regulatory_summary | 6.793 | 0.553 | 9.154 | |
guess_id | 6.224 | 0.511 | 8.234 | |
list_attributes | 6.191 | 0.520 | 8.163 | |
list_datasets | 6.171 | 0.480 | 7.921 | |
non_existing_intervals | 0.001 | 0.001 | 0.002 | |
plot_dna_objects | 15.438 | 0.767 | 19.147 | |
regulondb | 6.185 | 0.665 | 8.179 | |