Michael Love
| Snapshot Date: 2024-04-26 14:00:18 -0400 (Fri, 26 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/nullranges |
| git_branch: devel |
| git_last_commit: f75cb5b |
| git_last_commit_date: 2023-10-24 11:37:10 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-04-27 11:41:04 -0400 (Sat, 27 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4752 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4518 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4473 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1446/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.9.0 (landing page) Michael Love
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: nullranges |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings nullranges_1.9.0.tar.gz |
| StartedAt: 2024-04-27 08:26:11 -0000 (Sat, 27 Apr 2024) |
| EndedAt: 2024-04-27 08:32:04 -0000 (Sat, 27 Apr 2024) |
| EllapsedTime: 352.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: nullranges.Rcheck |
| Warnings: 0 |
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###
### Running command:
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### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD check --install=check:nullranges.install-out.txt --library=/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library --no-vignettes --timings nullranges_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/nullranges.Rcheck’
* using R version 4.4.0 beta (2024-04-15 r86425)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘nullranges/DESCRIPTION’ ... OK
* this is package ‘nullranges’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nullranges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) MatchedDataFrame.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedDataFrame.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:83: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:84: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGInteractions.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:74: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:85: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:86: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:87: Lost braces in \itemize; meant \describe ?
checkRd: (-1) MatchedGRanges.Rd:88: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchRanges.Rd:67-70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchRanges.Rd:71-73: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchRanges.Rd:74-77: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchedClass.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchedClass.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchedClass.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchedClass.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) matchedClass.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) segmentDensity.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) segmentDensity.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.19-bioc/meat/nullranges.Rcheck/00check.log’
for details.
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(nullranges)
>
> test_check("nullranges")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
>
> proc.time()
user system elapsed
21.347 1.528 22.904
nullranges.Rcheck/nullranges-Ex.timings
| name | user | system | elapsed | |
| MatchedDataFrame | 2.474 | 0.080 | 2.543 | |
| MatchedGInteractions | 0.728 | 0.008 | 0.731 | |
| MatchedGRanges | 0.667 | 0.001 | 0.661 | |
| bootRanges | 1.319 | 0.031 | 1.353 | |
| combnCov | 0.004 | 0.000 | 0.004 | |
| covariates | 0.162 | 0.000 | 0.159 | |
| focal | 0.185 | 0.004 | 0.186 | |
| indices | 0.170 | 0.004 | 0.170 | |
| makeExampleMatchedDataSet | 0.772 | 0.008 | 0.771 | |
| matchRanges | 1.629 | 0.008 | 1.593 | |
| matched | 0.183 | 0.000 | 0.181 | |
| matchedClass | 0.183 | 0.001 | 0.179 | |
| matchedData | 0.177 | 0.004 | 0.178 | |
| method | 0.188 | 0.000 | 0.185 | |
| oneRegionSegment | 0.520 | 0.008 | 1.442 | |
| overview | 0.219 | 0.000 | 0.215 | |
| plotCovariate | 3.425 | 0.016 | 3.438 | |
| plotPropensity | 1.618 | 0.020 | 1.634 | |
| plotSegment | 1.851 | 0.091 | 1.947 | |
| pool | 0.203 | 0.025 | 0.223 | |
| reduceSegment | 0.310 | 0.000 | 0.311 | |
| segmentDensity | 0.638 | 0.000 | 0.640 | |
| unmatched | 0.321 | 0.007 | 0.326 | |
| withReplacement | 0.216 | 0.000 | 0.213 | |