Michael Love
| Snapshot Date: 2024-04-28 14:00:16 -0400 (Sun, 28 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/nullranges |
| git_branch: devel |
| git_last_commit: f75cb5b |
| git_last_commit_date: 2023-10-24 11:37:10 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-04-29 11:41:08 -0400 (Mon, 29 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4752 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4518 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4475 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1446/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| nullranges 1.9.0 (landing page) Michael Love
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: nullranges |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges |
| StartedAt: 2024-04-29 00:52:24 -0000 (Mon, 29 Apr 2024) |
| EndedAt: 2024-04-29 00:55:17 -0000 (Mon, 29 Apr 2024) |
| EllapsedTime: 172.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data nullranges ### ############################################################################## ############################################################################## * checking for file ‘nullranges/DESCRIPTION’ ... OK * preparing ‘nullranges’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bootRanges.Rmd’ using rmarkdown Quitting from lines at lines 168-183 [excluderanges] (bootRanges.Rmd) Error: processing vignette 'bootRanges.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub filename: annotationhub.index.rds --- failed re-building ‘bootRanges.Rmd’ --- re-building ‘matchRanges.Rmd’ using rmarkdown --- finished re-building ‘matchRanges.Rmd’ --- re-building ‘matching_ginteractions.Rmd’ using rmarkdown --- finished re-building ‘matching_ginteractions.Rmd’ --- re-building ‘matching_granges.Rmd’ using rmarkdown --- finished re-building ‘matching_granges.Rmd’ --- re-building ‘matching_pool_set.Rmd’ using rmarkdown Quitting from lines at lines 42-49 [unnamed-chunk-1] (matching_pool_set.Rmd) Error: processing vignette 'matching_pool_set.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub filename: annotationhub.index.rds --- failed re-building ‘matching_pool_set.Rmd’ --- re-building ‘nullranges.Rmd’ using rmarkdown --- finished re-building ‘nullranges.Rmd’ SUMMARY: processing the following files failed: ‘bootRanges.Rmd’ ‘matching_pool_set.Rmd’ Error: Vignette re-building failed. Execution halted