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This page was generated on 2024-03-28 11:40:46 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 847/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
getDEE2 1.13.0  (landing page)
Mark Ziemann
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/getDEE2
git_branch: devel
git_last_commit: bb7d9a0
git_last_commit_date: 2023-10-24 11:22:59 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for getDEE2 on kunpeng2


To the developers/maintainers of the getDEE2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/getDEE2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: getDEE2
Version: 1.13.0
Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2
StartedAt: 2024-03-27 22:47:17 -0000 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 22:50:59 -0000 (Wed, 27 Mar 2024)
EllapsedTime: 222.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2
###
##############################################################################
##############################################################################


* checking for file ‘getDEE2/DESCRIPTION’ ... OK
* preparing ‘getDEE2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘getDEE2.Rmd’ using rmarkdown
trying URL 'http://dee2.io/metadata/celegans_metadata.tsv.cut'
Content type 'text/tab-separated-values' length 1815035 bytes (1.7 MB)
==================================================
downloaded 1.7 MB

trying URL 'http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363796&x=SRR363797&x=SRR363798&x=SRR363799'

Quitting from lines 107-114 [example1] (getDEE2.Rmd)
Error: processing vignette 'getDEE2.Rmd' failed with diagnostics:
'getURL()' failed:
  URL: http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363796&x=SRR363797&x=SRR363798&x=SRR363799
  error: cannot open URL 'http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363796&x=SRR363797&x=SRR363798&x=SRR363799'
--- failed re-building ‘getDEE2.Rmd’

SUMMARY: processing the following file failed:
  ‘getDEE2.Rmd’

Error: Vignette re-building failed.
Execution halted