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This page was generated on 2022-06-24 11:06:28 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for flowWorkspace on palomino4


To the developers/maintainers of the flowWorkspace package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowWorkspace.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 692/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowWorkspace 4.9.0  (landing page)
Greg Finak , Mike Jiang
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/flowWorkspace
git_branch: master
git_last_commit: 5c6e34c
git_last_commit_date: 2022-04-26 11:07:52 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: flowWorkspace
Version: 4.9.0
Command: rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowWorkspace.buildbin-libdir flowWorkspace_4.9.0.tar.gz
StartedAt: 2022-06-24 07:36:56 -0400 (Fri, 24 Jun 2022)
EndedAt: 2022-06-24 07:41:09 -0400 (Fri, 24 Jun 2022)
EllapsedTime: 252.6 seconds
RetCode: 0
Status:   OK  
PackageFile: flowWorkspace_4.9.0.zip
PackageFileSize: 5.385 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowWorkspace.buildbin-libdir flowWorkspace_4.9.0.tar.gz
###
##############################################################################
##############################################################################


only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'flowWorkspace' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_API.cpp -o R_API.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_API.cpp:9:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_API.cpp:9:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_GatingHierarchy.cpp:17:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from R_GatingHierarchy.cpp:17:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_GatingSet.cpp -o R_GatingSet.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace.h:5,
                 from R_GatingSet.cpp:10:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace.h:5,
                 from R_GatingSet.cpp:10:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace.h:5,
                 from RcppExports.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace.h:5,
                 from RcppExports.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp.h:46,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15,
                 from ../inst/include/flowWorkspace.h:6,
                 from RcppExports.cpp:4:
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = cytolib::CytoFrameView]':
RcppExports.cpp:629:43:   required from here
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   31 |     delete obj;
      |     ^~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cytoctxAPI.cpp -o cytoctxAPI.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:12,
                 from cytoctxAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:12,
                 from cytoctxAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cytoframeAPI.cpp -o cytoframeAPI.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
                 from cytoframeAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
                 from cytoframeAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp.h:46,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15,
                 from cytoframeAPI.cpp:3:
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = cytolib::CytoFrameView]':
cytoframeAPI.cpp:9:43:   required from here
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   31 |     delete obj;
      |     ^~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cytosetAPI.cpp -o cytosetAPI.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
                 from cytosetAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
                 from cytosetAPI.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp.h:46,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15,
                 from cytosetAPI.cpp:2:
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h: In instantiation of 'void Rcpp::standard_delete_finalizer(T*) [with T = cytolib::CytoFrameView]':
cytosetAPI.cpp:38:81:   required from here
F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include/Rcpp/XPtr.h:31:5: warning: deleting object of polymorphic class type 'cytolib::CytoFrameView' which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   31 |     delete obj;
      |     ^~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getDescendants.cpp -o getDescendants.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getDescendants.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getDescendants.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getPopStats.cpp -o getPopStats.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getPopStats.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getPopStats.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getSingleCellExpression.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from getSingleCellExpression.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c h5_error_r_handler.cpp -o h5_error_r_handler.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:12,
                 from h5_error_r_handler.cpp:8:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:12,
                 from h5_error_r_handler.cpp:8:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DRCPP_PARALLEL_USE_TBB=1 -fpermissive  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/BH/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c setCounts.cpp -o setCounts.o
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/transformation.hpp:18,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:15,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from setCounts.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
F:/biocbuild/bbs-3.16-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
In file included from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/CytoFrame.hpp:16,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/gate.hpp:12,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:14,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:13,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
                 from F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:14,
                 from setCounts.cpp:1:
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp: In constructor 'cytolib::compensation::compensation(const string&)':
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   58 |   if(valVec.size() != 1+n+n*n){
      |      ~~~~~~~~~~~~~~^~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   62 |    if(valVec.size() == 1+n+2*n*n){
      |       ~~~~~~~~~~~~~~^~~~~~~~~~~~
F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   68 |     for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
mkdir -p "F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64"
ar rs "F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoctxAPI.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o
C:\rtools42\x86_64-w64-mingw32.static.posix\bin\ar.exe: creating F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/x64/libflowWorkspace.a
g++ -shared -s -static-libgcc -o flowWorkspace.dll tmp.def R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoctxAPI.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath F:/biocbuild/bbs-3.16-bioc/R/library/cytolib/lib/x64/libcytolib.a F:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/lib/x64/GatingSet.pb.o -LF:/biocbuild/bbs-3.16-bioc/R/library/RProtoBufLib/lib/x64 -lprotobuf -LF:/biocbuild/bbs-3.16-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LF:/biocbuild/bbs-3.16-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -lws2_32 -lbcrypt -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'flowWorkspace' as flowWorkspace_4.9.0.zip
* DONE (flowWorkspace)