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This page was generated on 2022-06-27 11:05:18 -0400 (Mon, 27 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
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BUILD results for fgga on nebbiolo2


To the developers/maintainers of the fgga package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fgga.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 653/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fgga 1.5.0  (landing page)
Spetale Flavio
Snapshot Date: 2022-06-26 14:00:03 -0400 (Sun, 26 Jun 2022)
git_url: https://git.bioconductor.org/packages/fgga
git_branch: master
git_last_commit: b50fbfe
git_last_commit_date: 2022-04-26 12:15:36 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped

Summary

Package: fgga
Version: 1.5.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgga
StartedAt: 2022-06-26 16:23:40 -0400 (Sun, 26 Jun 2022)
EndedAt: 2022-06-26 16:24:26 -0400 (Sun, 26 Jun 2022)
EllapsedTime: 45.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgga
###
##############################################################################
##############################################################################


* checking for file ‘fgga/DESCRIPTION’ ... OK
* preparing ‘fgga’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fgga.Rmd’ using rmarkdown
Loading required package: RBGL
Loading required package: graph
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname


Loading required package: Category
Loading required package: Matrix

Attaching package: 'Matrix'

The following object is masked from 'package:S4Vectors':

    expand


Attaching package: 'GOstats'

The following object is masked from 'package:AnnotationDbi':

    makeGOGraph

GO-term: GO:0000166
GO-term: GO:0003674
GO-term: GO:0003676
GO-term: GO:0003677
GO-term: GO:0003824
GO-term: GO:0004888
GO-term: GO:0005102
GO-term: GO:0005215
GO-term: GO:0005488
GO-term: GO:0005515
GO-term: GO:0005524
GO-term: GO:0008144
GO-term: GO:0016740
GO-term: GO:0016787
GO-term: GO:0017076
GO-term: GO:0019899
GO-term: GO:0030554
GO-term: GO:0032553
GO-term: GO:0032555
GO-term: GO:0032559
GO-term: GO:0035639
GO-term: GO:0036094
GO-term: GO:0038023
GO-term: GO:0042802
GO-term: GO:0043167
GO-term: GO:0043168
GO-term: GO:0043169
GO-term: GO:0046872
GO-term: GO:0060089
GO-term: GO:0097159
GO-term: GO:0097367
GO-term: GO:0098772
GO-term: GO:0140096
GO-term: GO:0140110
GO-term: GO:1901265
GO-term: GO:1901363
Quitting from lines 250-279 (fgga.Rmd) 
Error: processing vignette 'fgga.Rmd' failed with diagnostics:
there is no package called 'PerfMeas'
--- failed re-building ‘fgga.Rmd’

SUMMARY: processing the following file failed:
  ‘fgga.Rmd’

Error: Vignette re-building failed.
Execution halted