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###
### Running command:
###
###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:famat.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings famat_1.7.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/famat.Rcheck'
* using R version 4.2.0 Patched (2022-06-02 r82447 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'famat/DESCRIPTION' ... OK
* this is package 'famat' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'famat' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
compl_data   84.02   4.14   88.98
interactions  5.07   0.39   11.42
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  length(hierapath) not equal to 3.
  1/1 mismatches
  [1] 2 - 3 == -1
  ── Failure (test-compl_data.R:23:3): informations are good ─────────────────────
  nrow(inter_values) not equal to 16.
  1/1 mismatches
  [1] 13 - 16 == -3
  ── Failure (test-compl_data.R:25:3): informations are good ─────────────────────
  nrow(sub) not equal to 16.
  1/1 mismatches
  [1] 13 - 16 == -3
  
  [ FAIL 6 | WARN 0 | SKIP 0 | PASS 6 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.16-bioc/meat/famat.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/famat_1.7.0.tar.gz && rm -rf famat.buildbin-libdir && mkdir famat.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=famat.buildbin-libdir famat_1.7.0.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL famat_1.7.0.zip && rm famat_1.7.0.tar.gz famat_1.7.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 3628k  100 3628k    0     0  12.1M      0 --:--:-- --:--:-- --:--:-- 12.1M
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'famat' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'famat' as famat_1.7.0.zip
* DONE (famat)
* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
package 'famat' successfully unpacked and MD5 sums checked

R version 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(famat)

> 
> test_check("famat")
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 6 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-compl_data.R:15:3): informations are good ─────────────────────
nrow(heatmap) not equal to 16.
1/1 mismatches
[1] 13 - 16 == -3
── Failure (test-compl_data.R:17:3): informations are good ─────────────────────
nrow(types) not equal to 12.
1/1 mismatches
[1] 11 - 12 == -1
── Failure (test-compl_data.R:21:3): informations are good ─────────────────────
length(hierabrite) not equal to 3.
1/1 mismatches
[1] 2 - 3 == -1
── Failure (test-compl_data.R:22:3): informations are good ─────────────────────
length(hierapath) not equal to 3.
1/1 mismatches
[1] 2 - 3 == -1
── Failure (test-compl_data.R:23:3): informations are good ─────────────────────
nrow(inter_values) not equal to 16.
1/1 mismatches
[1] 13 - 16 == -3
── Failure (test-compl_data.R:25:3): informations are good ─────────────────────
nrow(sub) not equal to 16.
1/1 mismatches
[1] 13 - 16 == -3

[ FAIL 6 | WARN 0 | SKIP 0 | PASS 6 ]
Error: Test failures
Execution halted