Yi Zhou
| Snapshot Date: 2023-03-28 14:00:22 -0400 (Tue, 28 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/brendaDb |
| git_branch: devel |
| git_last_commit: 7e1d01f |
| git_last_commit_date: 2022-12-10 12:16:52 -0400 (Sat, 10 Dec 2022) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-29 11:06:04 -0400 (Wed, 29 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4547 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4308 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4301 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the brendaDb package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/brendaDb.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 235/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| brendaDb 1.13.0 (landing page) Yi Zhou
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: brendaDb |
| Version: 1.13.0 |
| Command: rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh brendaDb_1.13.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R brendaDb.buildbin-libdir |
| StartedAt: 2023-03-29 06:56:34 -0400 (Wed, 29 Mar 2023) |
| EndedAt: 2023-03-29 06:57:27 -0400 (Wed, 29 Mar 2023) |
| EllapsedTime: 52.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: brendaDb_1.13.0.tgz |
| PackageFileSize: 745.2 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh brendaDb_1.13.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R brendaDb.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=brendaDb.buildbin-libdir brendaDb_1.13.0.tar.gz' >>>>>>> * installing *source* package ‘brendaDb’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using C++11 using SDK: ‘’ clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c read_brenda.cpp -o read_brenda.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o brendaDb.so RcppExports.o read_brenda.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.17-bioc/meat/brendaDb.buildbin-libdir/00LOCK-brendaDb/00new/brendaDb/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brendaDb) >>>>>>> >>>>>>> FIXING LINKS FOR brendaDb.buildbin-libdir/brendaDb/libs/brendaDb.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "brendaDb.buildbin-libdir/brendaDb/libs/brendaDb.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "brendaDb.buildbin-libdir/brendaDb/libs/brendaDb.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "brendaDb.buildbin-libdir/brendaDb/libs/brendaDb.so"