Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-17 11:37:28 -0400 (Fri, 17 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4663 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4398 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4425 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 957/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.11.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.11.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPiP.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings HPiP_1.11.0.tar.gz |
StartedAt: 2024-05-16 01:49:01 -0400 (Thu, 16 May 2024) |
EndedAt: 2024-05-16 01:53:47 -0400 (Thu, 16 May 2024) |
EllapsedTime: 286.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPiP.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings HPiP_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck' * using R version 4.4.0 RC (2024-04-16 r86468 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'HPiP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HPiP' version '1.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HPiP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: 'ftrCOOL' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed FSmethod 32.18 1.82 34.09 var_imp 32.47 1.26 33.75 corr_plot 31.73 1.48 33.22 pred_ensembel 14.33 0.66 10.62 enrichfindP 0.63 0.16 14.23 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'F:/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log' for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'HPiP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 99.510449 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 94.523070 iter 10 value 87.038557 final value 86.955823 converged Fitting Repeat 3 # weights: 103 initial value 96.228938 final value 94.428839 converged Fitting Repeat 4 # weights: 103 initial value 100.870900 final value 94.428839 converged Fitting Repeat 5 # weights: 103 initial value 99.111713 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 100.182531 final value 93.701657 converged Fitting Repeat 2 # weights: 305 initial value 105.086596 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 98.816202 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 108.707265 final value 94.467391 converged Fitting Repeat 5 # weights: 305 initial value 111.067035 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 131.737088 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 99.624173 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 101.148487 final value 94.467392 converged Fitting Repeat 4 # weights: 507 initial value 138.074961 final value 94.467391 converged Fitting Repeat 5 # weights: 507 initial value 99.415498 final value 94.484210 converged Fitting Repeat 1 # weights: 103 initial value 106.081078 iter 10 value 94.289603 iter 20 value 88.293946 iter 30 value 86.617152 iter 40 value 84.090929 iter 50 value 80.836267 iter 60 value 80.157220 iter 70 value 80.080461 iter 80 value 79.805813 iter 90 value 79.420081 final value 79.419751 converged Fitting Repeat 2 # weights: 103 initial value 109.496342 iter 10 value 93.493954 iter 20 value 84.709596 iter 30 value 83.155603 iter 40 value 83.003426 iter 50 value 82.551319 iter 60 value 82.315382 iter 70 value 82.248494 final value 82.248478 converged Fitting Repeat 3 # weights: 103 initial value 97.726319 iter 10 value 94.488630 iter 20 value 93.327594 iter 30 value 91.639473 iter 40 value 91.513466 iter 50 value 91.505308 final value 91.505283 converged Fitting Repeat 4 # weights: 103 initial value 100.352294 iter 10 value 94.478792 iter 20 value 84.632992 iter 30 value 83.544197 iter 40 value 82.497258 iter 50 value 81.753841 iter 60 value 81.738065 iter 70 value 81.713194 iter 80 value 81.604719 iter 90 value 81.561537 final value 81.560308 converged Fitting Repeat 5 # weights: 103 initial value 100.286398 iter 10 value 94.475334 iter 20 value 92.202248 iter 30 value 87.829328 iter 40 value 82.624595 iter 50 value 81.990405 iter 60 value 81.749044 iter 70 value 81.641957 iter 80 value 81.005340 iter 90 value 79.696583 iter 100 value 79.419853 final value 79.419853 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 100.129468 iter 10 value 92.755847 iter 20 value 90.719060 iter 30 value 90.330760 iter 40 value 90.060030 iter 50 value 86.947487 iter 60 value 85.062024 iter 70 value 84.434193 iter 80 value 83.534608 iter 90 value 83.251106 iter 100 value 82.944916 final value 82.944916 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.097524 iter 10 value 94.569864 iter 20 value 85.919164 iter 30 value 82.728827 iter 40 value 81.096265 iter 50 value 79.997698 iter 60 value 79.742941 iter 70 value 79.517982 iter 80 value 78.848169 iter 90 value 78.767077 iter 100 value 78.465580 final value 78.465580 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.680063 iter 10 value 94.820110 iter 20 value 94.444408 iter 30 value 84.845347 iter 40 value 84.059034 iter 50 value 83.314219 iter 60 value 80.353956 iter 70 value 79.805251 iter 80 value 79.112912 iter 90 value 78.180974 iter 100 value 77.700247 final value 77.700247 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.882274 iter 10 value 94.478937 iter 20 value 87.398618 iter 30 value 84.915139 iter 40 value 83.647807 iter 50 value 82.966024 iter 60 value 82.141942 iter 70 value 81.356322 iter 80 value 79.189395 iter 90 value 78.715663 iter 100 value 78.358234 final value 78.358234 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.361982 iter 10 value 94.501224 iter 20 value 92.007013 iter 30 value 83.921608 iter 40 value 78.749556 iter 50 value 78.036385 iter 60 value 77.459984 iter 70 value 77.362425 iter 80 value 77.332366 iter 90 value 77.314559 iter 100 value 77.290879 final value 77.290879 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 142.040497 iter 10 value 94.274931 iter 20 value 88.147486 iter 30 value 81.494650 iter 40 value 80.933082 iter 50 value 80.223454 iter 60 value 79.535812 iter 70 value 78.461493 iter 80 value 78.368929 iter 90 value 78.262762 iter 100 value 77.818413 final value 77.818413 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.259715 iter 10 value 95.942034 iter 20 value 86.900715 iter 30 value 85.053639 iter 40 value 84.695474 iter 50 value 84.554633 iter 60 value 83.346448 iter 70 value 79.556100 iter 80 value 78.024190 iter 90 value 77.704078 iter 100 value 77.626893 final value 77.626893 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.354515 iter 10 value 95.023116 iter 20 value 94.276971 iter 30 value 91.927511 iter 40 value 90.323752 iter 50 value 83.645068 iter 60 value 80.823787 iter 70 value 80.178485 iter 80 value 80.060999 iter 90 value 79.493860 iter 100 value 78.555269 final value 78.555269 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.456041 iter 10 value 95.105932 iter 20 value 94.590904 iter 30 value 94.103738 iter 40 value 89.725219 iter 50 value 88.670842 iter 60 value 86.859541 iter 70 value 85.543787 iter 80 value 84.907204 iter 90 value 83.440124 iter 100 value 82.212089 final value 82.212089 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 115.464367 iter 10 value 94.198331 iter 20 value 87.586686 iter 30 value 83.000568 iter 40 value 79.576573 iter 50 value 78.684676 iter 60 value 78.176374 iter 70 value 77.851748 iter 80 value 77.642693 iter 90 value 77.460536 iter 100 value 77.328454 final value 77.328454 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.169389 final value 94.485722 converged Fitting Repeat 2 # weights: 103 initial value 100.698833 final value 94.477889 converged Fitting Repeat 3 # weights: 103 initial value 103.390807 final value 94.485860 converged Fitting Repeat 4 # weights: 103 initial value 98.314896 final value 94.468854 converged Fitting Repeat 5 # weights: 103 initial value 98.198833 final value 94.486291 converged Fitting Repeat 1 # weights: 305 initial value 96.688677 iter 10 value 94.489051 iter 20 value 94.249302 iter 30 value 91.856070 iter 40 value 85.650908 iter 50 value 79.832289 iter 60 value 79.627343 iter 70 value 79.625577 final value 79.624271 converged Fitting Repeat 2 # weights: 305 initial value 100.487073 iter 10 value 93.019249 iter 20 value 81.532865 iter 30 value 80.719553 iter 40 value 80.706540 iter 50 value 80.191594 iter 60 value 79.812802 iter 70 value 79.812220 iter 80 value 79.806245 iter 90 value 79.418851 iter 100 value 79.412788 final value 79.412788 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.049585 iter 10 value 94.489168 iter 20 value 94.369215 iter 30 value 90.786834 iter 40 value 90.618173 iter 50 value 90.595587 iter 60 value 87.075788 iter 70 value 85.755966 iter 80 value 85.752695 iter 90 value 85.722866 iter 100 value 85.722508 final value 85.722508 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.943286 iter 10 value 94.489695 iter 20 value 94.362315 iter 30 value 86.108152 iter 40 value 85.606584 iter 50 value 84.575954 iter 60 value 81.422401 iter 70 value 80.989362 iter 80 value 80.983111 iter 90 value 80.981811 iter 100 value 80.979936 final value 80.979936 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.852430 iter 10 value 94.488601 iter 20 value 87.716618 iter 30 value 86.743027 iter 40 value 86.734975 final value 86.734935 converged Fitting Repeat 1 # weights: 507 initial value 108.250794 iter 10 value 94.491758 iter 20 value 91.068843 iter 30 value 87.197812 iter 30 value 87.197811 iter 30 value 87.197811 final value 87.197811 converged Fitting Repeat 2 # weights: 507 initial value 102.758847 iter 10 value 94.477058 iter 20 value 94.330086 iter 30 value 86.870160 iter 40 value 85.935224 iter 50 value 85.929997 iter 60 value 84.894146 iter 70 value 84.416497 iter 80 value 83.689408 final value 83.688774 converged Fitting Repeat 3 # weights: 507 initial value 102.479733 iter 10 value 94.475180 iter 20 value 94.464152 iter 30 value 85.103189 iter 40 value 81.909914 iter 50 value 81.851551 iter 60 value 79.541238 iter 70 value 79.455975 iter 80 value 79.398577 iter 90 value 79.398445 iter 100 value 79.397209 final value 79.397209 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 125.940171 iter 10 value 87.124685 iter 20 value 84.868565 iter 30 value 84.867605 iter 40 value 84.344862 iter 50 value 83.931478 iter 60 value 83.930598 iter 70 value 82.418372 iter 80 value 79.795264 iter 90 value 79.749468 iter 100 value 79.142086 final value 79.142086 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.837132 iter 10 value 94.475291 iter 20 value 94.468774 final value 94.468735 converged Fitting Repeat 1 # weights: 103 initial value 100.557028 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.520027 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 100.311132 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 108.319736 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.205903 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 110.961571 iter 10 value 92.936330 final value 92.936166 converged Fitting Repeat 2 # weights: 305 initial value 105.565379 iter 10 value 94.373055 final value 94.373019 converged Fitting Repeat 3 # weights: 305 initial value 100.322771 final value 94.455556 converged Fitting Repeat 4 # weights: 305 initial value 98.298266 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.778559 final value 94.312038 converged Fitting Repeat 1 # weights: 507 initial value 121.363266 iter 10 value 94.312039 iter 10 value 94.312039 iter 10 value 94.312039 final value 94.312039 converged Fitting Repeat 2 # weights: 507 initial value 123.687987 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 101.639034 iter 10 value 93.176902 iter 20 value 93.129903 final value 93.129890 converged Fitting Repeat 4 # weights: 507 initial value 101.370649 final value 94.467391 converged Fitting Repeat 5 # weights: 507 initial value 101.569035 final value 94.467386 converged Fitting Repeat 1 # weights: 103 initial value 99.223555 iter 10 value 94.456635 iter 20 value 88.648030 iter 30 value 85.039516 iter 40 value 84.804198 iter 50 value 84.501019 iter 60 value 84.114200 iter 70 value 83.926398 iter 80 value 83.717850 iter 90 value 83.640320 iter 100 value 83.593877 final value 83.593877 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 97.302540 iter 10 value 93.810904 iter 20 value 85.131560 iter 30 value 84.705678 iter 40 value 84.354664 iter 50 value 84.255827 iter 60 value 84.179414 iter 70 value 83.808020 iter 80 value 83.595657 final value 83.593863 converged Fitting Repeat 3 # weights: 103 initial value 115.516353 iter 10 value 94.475665 iter 20 value 92.370562 iter 30 value 90.549716 iter 40 value 90.499215 iter 50 value 84.922498 iter 60 value 83.382465 iter 70 value 83.032259 iter 80 value 82.699175 iter 90 value 82.468058 iter 100 value 82.169136 final value 82.169136 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.890517 iter 10 value 94.508181 iter 20 value 91.000503 iter 30 value 90.267162 iter 40 value 86.713234 iter 50 value 84.293281 iter 60 value 83.508993 iter 70 value 83.306708 iter 80 value 83.198071 iter 90 value 83.169604 iter 100 value 83.147478 final value 83.147478 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.038249 iter 10 value 94.492218 iter 20 value 94.417971 iter 30 value 87.479204 iter 40 value 86.254933 iter 50 value 85.817332 iter 60 value 85.327132 iter 70 value 85.121718 iter 80 value 85.110193 iter 90 value 85.019857 final value 84.998279 converged Fitting Repeat 1 # weights: 305 initial value 120.670006 iter 10 value 94.489834 iter 20 value 88.364985 iter 30 value 87.594636 iter 40 value 85.191284 iter 50 value 84.490269 iter 60 value 84.024608 iter 70 value 83.722475 iter 80 value 83.578301 iter 90 value 82.970798 iter 100 value 82.615869 final value 82.615869 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.587231 iter 10 value 92.729411 iter 20 value 91.836448 iter 30 value 88.532484 iter 40 value 87.063945 iter 50 value 85.214586 iter 60 value 81.958266 iter 70 value 80.784694 iter 80 value 80.451264 iter 90 value 80.364958 iter 100 value 80.169961 final value 80.169961 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.655374 iter 10 value 94.405799 iter 20 value 93.915997 iter 30 value 90.233459 iter 40 value 86.607111 iter 50 value 85.754357 iter 60 value 83.326480 iter 70 value 82.259057 iter 80 value 81.770822 iter 90 value 81.162393 iter 100 value 80.963493 final value 80.963493 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.575487 iter 10 value 94.443131 iter 20 value 92.892096 iter 30 value 87.042540 iter 40 value 84.186855 iter 50 value 83.755047 iter 60 value 82.905937 iter 70 value 82.333461 iter 80 value 81.147860 iter 90 value 80.794623 iter 100 value 80.573282 final value 80.573282 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.226828 iter 10 value 94.431512 iter 20 value 91.149571 iter 30 value 83.749585 iter 40 value 82.708535 iter 50 value 81.735645 iter 60 value 81.443093 iter 70 value 81.078106 iter 80 value 80.958318 iter 90 value 80.809820 iter 100 value 80.807617 final value 80.807617 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 124.269753 iter 10 value 95.937192 iter 20 value 90.040469 iter 30 value 86.207060 iter 40 value 84.240349 iter 50 value 83.474938 iter 60 value 82.580130 iter 70 value 81.994843 iter 80 value 81.698772 iter 90 value 81.237749 iter 100 value 80.985246 final value 80.985246 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 127.364411 iter 10 value 94.710531 iter 20 value 94.469699 iter 30 value 93.940771 iter 40 value 92.223132 iter 50 value 91.935727 iter 60 value 89.912433 iter 70 value 83.739616 iter 80 value 82.875202 iter 90 value 82.176860 iter 100 value 81.070676 final value 81.070676 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.069913 iter 10 value 94.284359 iter 20 value 86.852173 iter 30 value 85.735488 iter 40 value 83.070523 iter 50 value 82.800826 iter 60 value 82.360506 iter 70 value 81.763756 iter 80 value 81.143759 iter 90 value 80.671914 iter 100 value 80.386054 final value 80.386054 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.153195 iter 10 value 94.882688 iter 20 value 94.250812 iter 30 value 93.518643 iter 40 value 86.524338 iter 50 value 83.269353 iter 60 value 82.122576 iter 70 value 81.804090 iter 80 value 81.363804 iter 90 value 80.978563 iter 100 value 80.857262 final value 80.857262 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.495949 iter 10 value 95.102138 iter 20 value 86.293468 iter 30 value 84.272691 iter 40 value 83.060994 iter 50 value 81.861942 iter 60 value 80.827498 iter 70 value 80.455194 iter 80 value 80.325342 iter 90 value 80.175097 iter 100 value 80.020888 final value 80.020888 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.786419 final value 94.489349 converged Fitting Repeat 2 # weights: 103 initial value 98.909217 final value 94.486182 converged Fitting Repeat 3 # weights: 103 initial value 94.507980 final value 94.485649 converged Fitting Repeat 4 # weights: 103 initial value 104.268998 iter 10 value 94.486034 iter 20 value 94.483979 iter 30 value 94.142325 final value 93.783952 converged Fitting Repeat 5 # weights: 103 initial value 99.772779 final value 94.485755 converged Fitting Repeat 1 # weights: 305 initial value 111.527434 iter 10 value 94.488041 iter 20 value 94.484048 iter 30 value 84.824473 iter 40 value 83.576521 iter 50 value 82.375696 iter 60 value 82.155610 iter 70 value 81.919995 final value 81.919254 converged Fitting Repeat 2 # weights: 305 initial value 103.878607 iter 10 value 91.027200 iter 20 value 91.006826 iter 30 value 91.002156 iter 40 value 90.985405 iter 50 value 86.511131 iter 60 value 86.355074 iter 70 value 86.352058 final value 86.352022 converged Fitting Repeat 3 # weights: 305 initial value 109.315307 iter 10 value 92.060988 iter 20 value 91.598626 iter 30 value 91.595289 iter 40 value 91.020827 iter 50 value 85.946178 iter 60 value 85.359184 iter 70 value 84.884511 iter 80 value 84.694973 iter 90 value 83.863147 iter 100 value 83.482357 final value 83.482357 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 96.536788 iter 10 value 94.488774 iter 20 value 93.792770 iter 30 value 83.945380 iter 40 value 83.758868 iter 50 value 83.758327 iter 60 value 83.663438 iter 70 value 82.941613 iter 80 value 82.116495 iter 90 value 81.561606 iter 100 value 81.557531 final value 81.557531 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 110.935014 iter 10 value 94.488818 iter 20 value 94.322490 final value 94.312377 converged Fitting Repeat 1 # weights: 507 initial value 98.002484 iter 10 value 94.475269 iter 20 value 94.473856 iter 30 value 94.473032 iter 40 value 94.467617 iter 50 value 89.662865 iter 60 value 87.592735 final value 87.592728 converged Fitting Repeat 2 # weights: 507 initial value 106.525593 iter 10 value 93.791818 iter 20 value 93.784139 iter 30 value 86.567912 iter 40 value 83.978480 iter 50 value 83.706553 iter 60 value 82.872747 iter 70 value 82.853862 iter 80 value 82.661772 iter 90 value 82.651519 iter 100 value 82.645539 final value 82.645539 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.021454 iter 10 value 94.493381 iter 20 value 94.486034 iter 30 value 90.611779 final value 87.592613 converged Fitting Repeat 4 # weights: 507 initial value 158.710774 iter 10 value 94.491916 iter 20 value 94.250979 iter 30 value 91.694569 iter 40 value 83.700944 iter 50 value 82.762348 iter 60 value 82.574050 iter 70 value 82.473871 iter 80 value 81.705431 iter 90 value 79.977521 iter 100 value 79.344765 final value 79.344765 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.623430 iter 10 value 91.629277 iter 20 value 83.965788 iter 30 value 83.963350 iter 40 value 83.959688 iter 50 value 83.479602 iter 60 value 82.393764 iter 70 value 82.389473 iter 80 value 82.137260 iter 90 value 81.960264 iter 100 value 81.959456 final value 81.959456 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.729567 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.241204 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.768306 iter 10 value 93.670031 iter 20 value 93.632536 iter 30 value 93.590647 iter 40 value 93.535441 final value 93.535434 converged Fitting Repeat 4 # weights: 103 initial value 103.352191 final value 94.484137 converged Fitting Repeat 5 # weights: 103 initial value 97.058584 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 96.862220 iter 10 value 93.775010 iter 20 value 93.708902 iter 30 value 93.484141 final value 93.484125 converged Fitting Repeat 2 # weights: 305 initial value 106.523490 iter 10 value 89.480227 iter 20 value 85.890334 iter 30 value 85.601250 iter 40 value 85.507267 final value 85.507265 converged Fitting Repeat 3 # weights: 305 initial value 111.165550 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 96.718899 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 99.382363 iter 10 value 93.772998 final value 93.772973 converged Fitting Repeat 1 # weights: 507 initial value 113.685797 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 126.021265 iter 10 value 93.773013 final value 93.772973 converged Fitting Repeat 3 # weights: 507 initial value 112.192591 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 127.158733 iter 10 value 93.540608 final value 93.540410 converged Fitting Repeat 5 # weights: 507 initial value 107.742188 iter 10 value 93.773018 final value 93.772973 converged Fitting Repeat 1 # weights: 103 initial value 102.870242 iter 10 value 94.527605 iter 20 value 92.159213 iter 30 value 91.549677 iter 40 value 91.438784 iter 50 value 90.122674 iter 60 value 84.506223 iter 70 value 84.062975 iter 80 value 83.620094 iter 90 value 83.500686 final value 83.499188 converged Fitting Repeat 2 # weights: 103 initial value 99.379549 iter 10 value 94.494651 iter 20 value 94.485625 iter 30 value 89.553809 iter 40 value 87.117946 iter 50 value 86.931275 iter 60 value 86.906131 final value 86.904563 converged Fitting Repeat 3 # weights: 103 initial value 98.389640 iter 10 value 94.497573 iter 20 value 92.735188 iter 30 value 90.660203 iter 40 value 90.217839 iter 50 value 86.089742 iter 60 value 85.664746 iter 70 value 85.270007 iter 80 value 84.122993 iter 90 value 83.619508 final value 83.601260 converged Fitting Repeat 4 # weights: 103 initial value 101.217496 iter 10 value 94.453799 iter 20 value 93.622037 iter 30 value 90.632153 iter 40 value 85.093762 iter 50 value 84.933519 iter 60 value 84.784127 iter 70 value 84.074488 iter 80 value 83.689062 iter 90 value 83.601264 final value 83.601260 converged Fitting Repeat 5 # weights: 103 initial value 96.273084 iter 10 value 94.636167 iter 20 value 94.484538 iter 30 value 92.506568 iter 40 value 92.477434 iter 50 value 91.136140 iter 60 value 90.098403 iter 70 value 87.017048 iter 80 value 86.806409 iter 90 value 85.263182 iter 100 value 84.513179 final value 84.513179 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 108.880842 iter 10 value 94.076501 iter 20 value 89.764031 iter 30 value 87.224527 iter 40 value 86.040027 iter 50 value 83.954901 iter 60 value 83.718372 iter 70 value 83.200248 iter 80 value 82.842386 iter 90 value 82.765613 iter 100 value 82.746951 final value 82.746951 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.597587 iter 10 value 94.440961 iter 20 value 88.888632 iter 30 value 86.859516 iter 40 value 86.340998 iter 50 value 85.167093 iter 60 value 84.875603 iter 70 value 84.514540 iter 80 value 84.469663 iter 90 value 84.415494 iter 100 value 84.108097 final value 84.108097 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.375345 iter 10 value 94.119980 iter 20 value 89.472918 iter 30 value 88.782163 iter 40 value 87.234601 iter 50 value 85.362294 iter 60 value 84.706712 iter 70 value 84.495636 iter 80 value 83.975963 iter 90 value 83.320249 iter 100 value 82.815546 final value 82.815546 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.491005 iter 10 value 94.249431 iter 20 value 92.624964 iter 30 value 86.503359 iter 40 value 86.277481 iter 50 value 85.077272 iter 60 value 83.846970 iter 70 value 83.222465 iter 80 value 83.106147 iter 90 value 82.897346 iter 100 value 82.767072 final value 82.767072 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.412656 iter 10 value 94.538353 iter 20 value 92.847279 iter 30 value 91.392688 iter 40 value 88.765255 iter 50 value 85.968724 iter 60 value 84.393261 iter 70 value 83.618483 iter 80 value 82.825413 iter 90 value 82.533805 iter 100 value 82.433140 final value 82.433140 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 136.165214 iter 10 value 94.031802 iter 20 value 93.333881 iter 30 value 87.157850 iter 40 value 85.736108 iter 50 value 85.354919 iter 60 value 83.659233 iter 70 value 83.029153 iter 80 value 82.969973 iter 90 value 82.810011 iter 100 value 82.429989 final value 82.429989 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.423138 iter 10 value 94.309530 iter 20 value 92.034529 iter 30 value 91.504517 iter 40 value 90.340785 iter 50 value 88.384988 iter 60 value 85.351413 iter 70 value 84.747864 iter 80 value 84.015317 iter 90 value 83.497319 iter 100 value 83.426409 final value 83.426409 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.862123 iter 10 value 94.514546 iter 20 value 89.954557 iter 30 value 87.123842 iter 40 value 85.605990 iter 50 value 85.130745 iter 60 value 84.199277 iter 70 value 83.200006 iter 80 value 82.799786 iter 90 value 82.554984 iter 100 value 82.298656 final value 82.298656 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 111.038339 iter 10 value 94.703187 iter 20 value 93.794512 iter 30 value 88.048108 iter 40 value 86.988857 iter 50 value 85.669338 iter 60 value 85.115932 iter 70 value 84.628681 iter 80 value 84.361041 iter 90 value 84.120294 iter 100 value 83.971302 final value 83.971302 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 126.753953 iter 10 value 94.993444 iter 20 value 93.840110 iter 30 value 91.331811 iter 40 value 91.087577 iter 50 value 90.483453 iter 60 value 84.548771 iter 70 value 83.378410 iter 80 value 82.877215 iter 90 value 82.732385 iter 100 value 82.508899 final value 82.508899 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.795598 final value 94.486042 converged Fitting Repeat 2 # weights: 103 initial value 100.749294 iter 10 value 94.485897 final value 94.484272 converged Fitting Repeat 3 # weights: 103 initial value 97.389034 final value 94.485935 converged Fitting Repeat 4 # weights: 103 initial value 104.718790 final value 94.486414 converged Fitting Repeat 5 # weights: 103 initial value 98.599952 final value 94.485716 converged Fitting Repeat 1 # weights: 305 initial value 129.694138 iter 10 value 94.489470 iter 20 value 94.478918 iter 30 value 93.773976 final value 93.773960 converged Fitting Repeat 2 # weights: 305 initial value 104.715971 iter 10 value 94.489731 final value 94.484410 converged Fitting Repeat 3 # weights: 305 initial value 106.820437 iter 10 value 94.484728 iter 20 value 88.532486 iter 30 value 87.408108 iter 40 value 87.405787 iter 50 value 87.364695 final value 87.364329 converged Fitting Repeat 4 # weights: 305 initial value 101.826400 iter 10 value 94.489376 iter 20 value 94.347053 iter 30 value 85.887180 iter 40 value 85.538183 iter 50 value 84.894588 iter 60 value 83.953052 iter 70 value 83.690182 iter 80 value 83.681216 iter 90 value 83.680253 iter 100 value 83.680169 final value 83.680169 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 95.274118 iter 10 value 94.488584 iter 20 value 93.774300 iter 30 value 93.684065 iter 40 value 88.736658 iter 50 value 85.991544 iter 60 value 85.963699 iter 70 value 85.693067 iter 80 value 85.691740 final value 85.691739 converged Fitting Repeat 1 # weights: 507 initial value 127.759265 iter 10 value 93.855705 iter 20 value 88.268784 iter 30 value 87.387014 iter 40 value 87.383760 iter 50 value 87.382423 iter 60 value 86.032863 iter 70 value 86.030426 iter 80 value 86.018976 iter 90 value 85.981068 iter 100 value 85.945337 final value 85.945337 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.973700 iter 10 value 94.491593 iter 20 value 91.699902 iter 30 value 86.707792 iter 40 value 85.220307 iter 50 value 84.796765 iter 60 value 83.577684 iter 70 value 83.537918 iter 80 value 83.464158 iter 90 value 83.307645 iter 100 value 83.287468 final value 83.287468 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.736097 iter 10 value 93.782030 iter 20 value 92.033739 iter 30 value 88.783423 iter 40 value 88.329172 iter 50 value 88.324119 iter 60 value 86.840193 iter 70 value 84.428239 iter 80 value 84.409364 iter 90 value 84.242313 iter 100 value 83.869568 final value 83.869568 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.416209 iter 10 value 93.561801 iter 20 value 93.491521 iter 30 value 93.487597 iter 40 value 91.059705 iter 50 value 91.022384 iter 60 value 90.962795 iter 70 value 90.937526 iter 80 value 89.252188 iter 90 value 89.127207 iter 100 value 85.211121 final value 85.211121 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.786679 iter 10 value 94.494453 iter 20 value 93.775812 iter 30 value 93.773670 iter 40 value 93.515354 iter 50 value 93.103246 iter 60 value 86.450322 iter 70 value 85.634299 iter 80 value 85.631813 iter 90 value 85.631617 iter 100 value 85.631429 final value 85.631429 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.039149 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 101.886921 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 100.070088 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 99.991273 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 105.777687 final value 93.915746 converged Fitting Repeat 1 # weights: 305 initial value 122.945137 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 104.546189 iter 10 value 93.631799 iter 20 value 86.821424 iter 30 value 86.649603 final value 86.649574 converged Fitting Repeat 3 # weights: 305 initial value 94.421329 iter 10 value 87.419530 iter 20 value 85.963834 iter 30 value 85.959981 final value 85.959979 converged Fitting Repeat 4 # weights: 305 initial value 99.807848 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 94.576075 final value 93.551913 converged Fitting Repeat 1 # weights: 507 initial value 103.438660 final value 93.601516 converged Fitting Repeat 2 # weights: 507 initial value 114.773483 final value 93.915747 converged Fitting Repeat 3 # weights: 507 initial value 117.799133 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 100.744765 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 96.785017 final value 93.781016 converged Fitting Repeat 1 # weights: 103 initial value 102.062760 iter 10 value 94.026082 iter 20 value 90.944646 iter 30 value 90.322424 iter 40 value 84.761106 iter 50 value 84.523594 iter 60 value 82.500286 iter 70 value 81.863632 iter 80 value 81.237007 iter 90 value 80.889398 iter 100 value 80.814083 final value 80.814083 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.770992 iter 10 value 93.920694 iter 20 value 85.821448 iter 30 value 84.405166 iter 40 value 84.197140 iter 50 value 83.281773 iter 60 value 82.865301 iter 70 value 82.658352 iter 80 value 82.633937 final value 82.627761 converged Fitting Repeat 3 # weights: 103 initial value 100.070973 iter 10 value 87.388505 iter 20 value 85.003866 iter 30 value 84.712967 iter 40 value 84.499306 iter 50 value 82.790270 iter 60 value 82.138011 iter 70 value 82.050684 final value 82.050682 converged Fitting Repeat 4 # weights: 103 initial value 97.794335 iter 10 value 94.054689 iter 20 value 93.955865 iter 30 value 93.952182 iter 40 value 92.736142 iter 50 value 87.241865 iter 60 value 86.786895 iter 70 value 86.156844 iter 80 value 83.937809 iter 90 value 83.376719 iter 100 value 82.596238 final value 82.596238 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 96.547895 iter 10 value 94.072229 iter 20 value 85.725350 iter 30 value 84.640790 iter 40 value 83.626297 iter 50 value 82.139026 iter 60 value 81.687424 iter 70 value 80.891221 iter 80 value 80.640258 final value 80.638443 converged Fitting Repeat 1 # weights: 305 initial value 103.060709 iter 10 value 94.054217 iter 20 value 85.898470 iter 30 value 85.266250 iter 40 value 83.934184 iter 50 value 82.921611 iter 60 value 80.955085 iter 70 value 80.344923 iter 80 value 79.594840 iter 90 value 79.384548 iter 100 value 79.258927 final value 79.258927 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 118.709930 iter 10 value 96.641752 iter 20 value 95.735474 iter 30 value 88.311370 iter 40 value 84.887415 iter 50 value 84.623354 iter 60 value 83.938724 iter 70 value 83.092558 iter 80 value 82.183438 iter 90 value 81.266337 iter 100 value 80.359371 final value 80.359371 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.484962 iter 10 value 94.308544 iter 20 value 93.870129 iter 30 value 87.086923 iter 40 value 85.114592 iter 50 value 84.888457 iter 60 value 84.552434 iter 70 value 81.968877 iter 80 value 79.808149 iter 90 value 79.562141 iter 100 value 79.475655 final value 79.475655 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.918576 iter 10 value 94.241025 iter 20 value 86.057195 iter 30 value 85.687869 iter 40 value 83.340315 iter 50 value 82.840389 iter 60 value 82.559860 iter 70 value 82.495205 iter 80 value 82.406281 iter 90 value 81.466518 iter 100 value 81.244018 final value 81.244018 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.898976 iter 10 value 94.215525 iter 20 value 92.535292 iter 30 value 91.068276 iter 40 value 90.053153 iter 50 value 84.050399 iter 60 value 81.668572 iter 70 value 80.257144 iter 80 value 79.694846 iter 90 value 79.453943 iter 100 value 79.288877 final value 79.288877 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.879385 iter 10 value 94.060196 iter 20 value 93.260312 iter 30 value 88.297089 iter 40 value 86.719091 iter 50 value 85.820675 iter 60 value 83.725451 iter 70 value 82.309304 iter 80 value 80.311186 iter 90 value 79.721598 iter 100 value 79.450367 final value 79.450367 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.957551 iter 10 value 93.563412 iter 20 value 83.676442 iter 30 value 80.770761 iter 40 value 80.244461 iter 50 value 79.479538 iter 60 value 79.316812 iter 70 value 79.276080 iter 80 value 79.122716 iter 90 value 79.099987 iter 100 value 79.012453 final value 79.012453 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.224595 iter 10 value 93.971775 iter 20 value 90.655096 iter 30 value 87.605361 iter 40 value 84.349582 iter 50 value 82.097542 iter 60 value 81.835140 iter 70 value 81.538180 iter 80 value 81.406453 iter 90 value 81.211508 iter 100 value 79.874651 final value 79.874651 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 119.199090 iter 10 value 94.330945 iter 20 value 93.136296 iter 30 value 87.062773 iter 40 value 86.727803 iter 50 value 84.491988 iter 60 value 83.501207 iter 70 value 82.684723 iter 80 value 81.946948 iter 90 value 81.244918 iter 100 value 80.216469 final value 80.216469 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.929739 iter 10 value 93.788189 iter 20 value 90.486100 iter 30 value 87.372157 iter 40 value 84.349311 iter 50 value 84.057016 iter 60 value 83.513295 iter 70 value 82.305793 iter 80 value 82.049835 iter 90 value 81.880847 iter 100 value 81.414096 final value 81.414096 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.173862 final value 94.054148 converged Fitting Repeat 2 # weights: 103 initial value 99.530163 final value 94.054489 converged Fitting Repeat 3 # weights: 103 initial value 104.766774 final value 94.054368 converged Fitting Repeat 4 # weights: 103 initial value 96.713474 final value 94.054588 converged Fitting Repeat 5 # weights: 103 initial value 103.693905 final value 94.054432 converged Fitting Repeat 1 # weights: 305 initial value 117.301189 iter 10 value 94.060320 iter 20 value 94.027531 iter 30 value 92.863094 final value 92.863074 converged Fitting Repeat 2 # weights: 305 initial value 95.916613 iter 10 value 93.920609 iter 20 value 93.916544 iter 30 value 85.275992 iter 40 value 83.031395 iter 50 value 82.850983 final value 82.850675 converged Fitting Repeat 3 # weights: 305 initial value 113.836919 iter 10 value 94.059739 iter 20 value 94.054522 iter 30 value 89.002346 iter 40 value 84.707389 iter 50 value 83.974807 iter 60 value 83.421614 iter 70 value 83.416952 iter 80 value 82.835430 iter 90 value 82.728027 iter 100 value 82.396623 final value 82.396623 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 93.698629 iter 10 value 86.889914 iter 20 value 86.875028 iter 30 value 86.874630 iter 40 value 83.983864 iter 50 value 82.976966 iter 60 value 82.803764 iter 70 value 82.790642 iter 70 value 82.790642 final value 82.790642 converged Fitting Repeat 5 # weights: 305 initial value 95.799680 iter 10 value 94.054868 iter 20 value 92.964375 iter 30 value 92.861861 iter 40 value 92.857662 iter 50 value 86.593774 iter 60 value 83.108603 iter 70 value 82.903726 iter 80 value 82.857971 iter 90 value 82.857273 final value 82.857249 converged Fitting Repeat 1 # weights: 507 initial value 97.278540 iter 10 value 93.924078 iter 20 value 93.595050 iter 30 value 92.867191 iter 40 value 92.862070 final value 92.862049 converged Fitting Repeat 2 # weights: 507 initial value 109.427840 iter 10 value 94.060845 iter 20 value 93.976147 iter 30 value 92.862293 iter 30 value 92.862292 iter 30 value 92.862292 final value 92.862292 converged Fitting Repeat 3 # weights: 507 initial value 109.050047 iter 10 value 94.030641 iter 20 value 94.023360 iter 30 value 93.086541 iter 40 value 92.847463 iter 50 value 92.847097 final value 92.847088 converged Fitting Repeat 4 # weights: 507 initial value 113.851958 iter 10 value 93.924416 iter 20 value 93.915950 iter 30 value 93.915730 iter 40 value 83.356576 iter 50 value 82.511411 iter 60 value 81.796426 iter 70 value 78.954305 iter 80 value 78.786306 final value 78.721140 converged Fitting Repeat 5 # weights: 507 initial value 109.744476 iter 10 value 94.061172 iter 20 value 94.016589 iter 30 value 92.881806 iter 40 value 92.865627 iter 50 value 89.150815 iter 60 value 84.386813 iter 70 value 83.564289 iter 80 value 83.562173 iter 90 value 83.489343 iter 100 value 83.475228 final value 83.475228 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.150028 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 97.358176 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 104.269627 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 95.700747 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.183102 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 97.789449 final value 93.582418 converged Fitting Repeat 2 # weights: 305 initial value 96.898791 iter 10 value 93.992038 iter 10 value 93.992038 iter 10 value 93.992038 final value 93.992038 converged Fitting Repeat 3 # weights: 305 initial value 103.400259 iter 10 value 94.023310 iter 10 value 94.023310 iter 10 value 94.023310 final value 94.023310 converged Fitting Repeat 4 # weights: 305 initial value 95.359118 iter 10 value 93.357394 iter 20 value 93.356704 iter 30 value 93.306179 final value 93.304777 converged Fitting Repeat 5 # weights: 305 initial value 107.853251 iter 10 value 93.386501 final value 93.356736 converged Fitting Repeat 1 # weights: 507 initial value 101.837158 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 100.732972 final value 93.582418 converged Fitting Repeat 3 # weights: 507 initial value 113.446849 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 101.544691 iter 10 value 93.304778 final value 93.304777 converged Fitting Repeat 5 # weights: 507 initial value 99.346596 iter 10 value 93.307214 final value 93.304783 converged Fitting Repeat 1 # weights: 103 initial value 102.278347 iter 10 value 93.955054 iter 20 value 93.234162 iter 30 value 90.310346 iter 40 value 89.479310 iter 50 value 84.787441 iter 60 value 83.941777 iter 70 value 83.723651 iter 80 value 82.986474 iter 90 value 82.301204 iter 100 value 81.520444 final value 81.520444 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.457822 iter 10 value 94.055013 iter 20 value 93.987448 iter 30 value 93.552487 iter 40 value 93.400166 iter 50 value 92.266724 iter 60 value 86.921178 iter 70 value 85.409891 iter 80 value 84.363687 iter 90 value 84.018646 iter 100 value 83.038172 final value 83.038172 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.650022 iter 10 value 94.026105 iter 20 value 92.832233 iter 30 value 86.261361 iter 40 value 86.063772 iter 50 value 85.833991 iter 60 value 85.374194 iter 70 value 85.167566 iter 80 value 85.165644 iter 80 value 85.165643 iter 80 value 85.165643 final value 85.165643 converged Fitting Repeat 4 # weights: 103 initial value 97.394965 iter 10 value 94.055762 iter 20 value 93.500790 iter 30 value 93.431318 iter 40 value 93.413623 iter 50 value 92.687014 iter 60 value 86.553358 iter 70 value 86.454985 iter 80 value 86.361628 iter 90 value 85.418112 iter 100 value 85.266574 final value 85.266574 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.601308 iter 10 value 93.824463 iter 20 value 89.170850 iter 30 value 86.410822 iter 40 value 86.168164 iter 50 value 85.931033 iter 60 value 85.449616 iter 70 value 85.265185 final value 85.264994 converged Fitting Repeat 1 # weights: 305 initial value 113.201857 iter 10 value 94.327041 iter 20 value 94.098581 iter 30 value 93.601015 iter 40 value 93.425937 iter 50 value 93.288079 iter 60 value 86.736345 iter 70 value 83.620402 iter 80 value 82.294711 iter 90 value 81.534222 iter 100 value 80.689661 final value 80.689661 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.052445 iter 10 value 94.013001 iter 20 value 91.865742 iter 30 value 86.006287 iter 40 value 84.695280 iter 50 value 83.955542 iter 60 value 82.547988 iter 70 value 82.502407 iter 80 value 82.430972 iter 90 value 82.166914 iter 100 value 81.985962 final value 81.985962 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.511180 iter 10 value 94.251394 iter 20 value 90.012627 iter 30 value 84.735121 iter 40 value 84.178993 iter 50 value 83.420929 iter 60 value 82.659138 iter 70 value 82.381485 iter 80 value 81.976722 iter 90 value 81.798006 iter 100 value 81.520536 final value 81.520536 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.908323 iter 10 value 94.255525 iter 20 value 93.996439 iter 30 value 89.301856 iter 40 value 88.439007 iter 50 value 86.224118 iter 60 value 85.004884 iter 70 value 84.328121 iter 80 value 83.929690 iter 90 value 83.256246 iter 100 value 81.911982 final value 81.911982 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 98.663332 iter 10 value 89.740065 iter 20 value 87.547865 iter 30 value 84.049991 iter 40 value 82.959015 iter 50 value 82.380162 iter 60 value 82.250340 iter 70 value 81.576975 iter 80 value 80.944941 iter 90 value 80.620106 iter 100 value 80.585951 final value 80.585951 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.052493 iter 10 value 94.683067 iter 20 value 93.612643 iter 30 value 93.104914 iter 40 value 88.019058 iter 50 value 86.925330 iter 60 value 86.277286 iter 70 value 84.328674 iter 80 value 83.590044 iter 90 value 82.949366 iter 100 value 82.714416 final value 82.714416 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.114914 iter 10 value 93.847150 iter 20 value 88.943321 iter 30 value 86.095421 iter 40 value 85.149120 iter 50 value 84.290534 iter 60 value 82.456724 iter 70 value 82.007526 iter 80 value 81.772052 iter 90 value 81.518898 iter 100 value 80.906751 final value 80.906751 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.471716 iter 10 value 94.098493 iter 20 value 89.704589 iter 30 value 86.912212 iter 40 value 86.659914 iter 50 value 86.402870 iter 60 value 83.555145 iter 70 value 83.215346 iter 80 value 82.848209 iter 90 value 82.171205 iter 100 value 81.128749 final value 81.128749 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.085393 iter 10 value 94.375501 iter 20 value 87.362000 iter 30 value 85.913843 iter 40 value 85.045198 iter 50 value 84.808257 iter 60 value 84.372028 iter 70 value 82.948861 iter 80 value 81.876785 iter 90 value 81.667102 iter 100 value 81.549631 final value 81.549631 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.990929 iter 10 value 93.837337 iter 20 value 88.642138 iter 30 value 86.150844 iter 40 value 84.207285 iter 50 value 83.238889 iter 60 value 82.714764 iter 70 value 82.568904 iter 80 value 82.429139 iter 90 value 81.825466 iter 100 value 81.378633 final value 81.378633 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.642019 final value 94.054836 converged Fitting Repeat 2 # weights: 103 initial value 112.471984 final value 94.054397 converged Fitting Repeat 3 # weights: 103 initial value 95.773865 iter 10 value 92.691389 iter 20 value 90.160063 iter 30 value 90.152709 final value 90.151181 converged Fitting Repeat 4 # weights: 103 initial value 95.608533 iter 10 value 94.054405 iter 20 value 93.472052 iter 30 value 93.356949 final value 93.356852 converged Fitting Repeat 5 # weights: 103 initial value 103.319157 final value 94.054738 converged Fitting Repeat 1 # weights: 305 initial value 110.093775 iter 10 value 94.057791 iter 20 value 94.052766 final value 93.356824 converged Fitting Repeat 2 # weights: 305 initial value 105.604749 iter 10 value 94.057592 iter 20 value 94.053203 iter 20 value 94.053203 iter 20 value 94.053203 final value 94.053203 converged Fitting Repeat 3 # weights: 305 initial value 97.790943 iter 10 value 93.314100 iter 20 value 93.244245 iter 30 value 93.126384 iter 40 value 92.999242 iter 50 value 92.998537 iter 60 value 92.996829 final value 92.996805 converged Fitting Repeat 4 # weights: 305 initial value 98.863569 iter 10 value 94.058496 iter 20 value 94.053335 iter 30 value 93.316176 iter 40 value 93.305308 final value 93.305263 converged Fitting Repeat 5 # weights: 305 initial value 107.471677 iter 10 value 93.789048 iter 20 value 93.586781 iter 30 value 92.963797 iter 40 value 86.389403 iter 50 value 86.140443 iter 60 value 86.081289 final value 86.080519 converged Fitting Repeat 1 # weights: 507 initial value 94.299808 iter 10 value 94.053770 iter 20 value 93.955251 iter 30 value 86.314940 iter 40 value 85.311979 iter 50 value 84.724281 iter 60 value 83.773726 iter 70 value 81.258083 iter 80 value 79.439760 iter 90 value 78.603894 iter 100 value 78.564178 final value 78.564178 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.707892 iter 10 value 93.591336 iter 20 value 93.583096 iter 30 value 92.462260 iter 40 value 90.507784 iter 50 value 90.501068 iter 60 value 90.462555 iter 70 value 90.460197 iter 80 value 90.460130 iter 90 value 90.459642 final value 90.459473 converged Fitting Repeat 3 # weights: 507 initial value 106.188266 iter 10 value 94.061129 iter 20 value 93.916171 iter 30 value 93.197168 iter 40 value 91.727362 iter 50 value 81.659932 iter 60 value 81.496316 iter 70 value 81.487748 iter 80 value 81.469353 iter 90 value 81.409507 iter 100 value 81.407657 final value 81.407657 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.628373 iter 10 value 94.061144 iter 20 value 94.048613 iter 30 value 86.876821 iter 40 value 86.230099 iter 50 value 86.229001 final value 86.227955 converged Fitting Repeat 5 # weights: 507 initial value 106.146497 iter 10 value 93.591082 iter 20 value 93.583303 final value 93.582752 converged Fitting Repeat 1 # weights: 507 initial value 130.260805 iter 10 value 116.541869 iter 20 value 108.973323 iter 30 value 108.437638 iter 40 value 107.068675 iter 50 value 103.450388 iter 60 value 100.971624 iter 70 value 100.533392 iter 80 value 100.339866 iter 90 value 100.254960 iter 100 value 100.195183 final value 100.195183 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 159.624648 iter 10 value 117.358151 iter 20 value 110.129964 iter 30 value 107.617373 iter 40 value 104.777728 iter 50 value 103.296134 iter 60 value 102.035571 iter 70 value 101.808451 iter 80 value 101.569359 iter 90 value 101.384830 iter 100 value 101.353397 final value 101.353397 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 162.351896 iter 10 value 118.105144 iter 20 value 112.094742 iter 30 value 107.778385 iter 40 value 105.788927 iter 50 value 104.532429 iter 60 value 103.775150 iter 70 value 102.941117 iter 80 value 102.457272 iter 90 value 102.116235 iter 100 value 101.746267 final value 101.746267 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 143.266798 iter 10 value 117.964338 iter 20 value 114.833642 iter 30 value 106.645522 iter 40 value 105.403721 iter 50 value 103.642649 iter 60 value 101.723253 iter 70 value 101.497573 iter 80 value 101.300430 iter 90 value 101.015211 iter 100 value 100.603576 final value 100.603576 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 147.341608 iter 10 value 118.003686 iter 20 value 116.283654 iter 30 value 114.652356 iter 40 value 106.356985 iter 50 value 104.794698 iter 60 value 104.289753 iter 70 value 103.373371 iter 80 value 102.414082 iter 90 value 102.128104 iter 100 value 102.033966 final value 102.033966 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Thu May 16 01:53:37 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 46.29 2.00 49.57
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 32.18 | 1.82 | 34.09 | |
FreqInteractors | 0.28 | 0.03 | 0.33 | |
calculateAAC | 0.04 | 0.04 | 0.08 | |
calculateAutocor | 0.36 | 0.09 | 0.45 | |
calculateCTDC | 0.07 | 0.02 | 0.08 | |
calculateCTDD | 0.87 | 0.01 | 0.89 | |
calculateCTDT | 0.31 | 0.02 | 0.33 | |
calculateCTriad | 0.36 | 0.03 | 0.39 | |
calculateDC | 0.07 | 0.02 | 0.07 | |
calculateF | 0.32 | 0.00 | 0.33 | |
calculateKSAAP | 0.1 | 0.0 | 0.1 | |
calculateQD_Sm | 2.08 | 0.14 | 2.23 | |
calculateTC | 1.53 | 0.12 | 1.66 | |
calculateTC_Sm | 0.25 | 0.02 | 0.26 | |
corr_plot | 31.73 | 1.48 | 33.22 | |
enrichfindP | 0.63 | 0.16 | 14.23 | |
enrichfind_hp | 0.11 | 0.02 | 1.04 | |
enrichplot | 0.32 | 0.01 | 0.34 | |
filter_missing_values | 0 | 0 | 0 | |
getFASTA | 0.02 | 0.02 | 2.39 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0 | 0 | 0 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0 | 0 | 0 | |
plotPPI | 0.08 | 0.03 | 0.11 | |
pred_ensembel | 14.33 | 0.66 | 10.62 | |
var_imp | 32.47 | 1.26 | 33.75 | |