Koki Tsuyuzaki
| Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/DelayedTensor |
| git_branch: devel |
| git_last_commit: e011fbe |
| git_last_commit_date: 2023-10-24 11:34:20 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:39:09 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 536/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedTensor 1.9.0 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the DelayedTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DelayedTensor |
| Version: 1.9.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DelayedTensor_1.9.0.tar.gz |
| StartedAt: 2024-03-27 20:42:02 -0400 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 20:49:40 -0400 (Wed, 27 Mar 2024) |
| EllapsedTime: 458.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedTensor.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings DelayedTensor_1.9.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/DelayedTensor.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DelayedTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DelayedTensor’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DelayedTensor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.block_khatri_rao_IDX2: no visible global function definition for
‘Lindex2Mindex’
.block_khatri_rao_IDX2: no visible global function definition for
‘Mindex2Lindex’
.block_kroneckerIDX: no visible global function definition for
‘Lindex2Mindex’
.block_kroneckerIDX: no visible global function definition for
‘Mindex2Lindex’
.block_reshape: no visible global function definition for
‘Lindex2Mindex’
.block_vec: no visible global function definition for ‘Mindex2Lindex’
.read_block_einsum: no visible global function definition for
‘Mindex2Lindex’
.tickMarksScheduling2: no visible global function definition for
‘Mindex2Lindex’
.write_block_einsum: no visible global function definition for
‘Mindex2Lindex’
einsum: no visible global function definition for ‘Lindex2Mindex’
Undefined global functions or variables:
Lindex2Mindex Mindex2Lindex
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
human_mid_brain.rda 677Kb 441Kb xz
mouse_mid_brain.rda 761Kb 511Kb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cp 149.763 17.716 176.817
tucker 22.136 2.578 24.973
mpca 10.689 1.200 12.028
pvd 6.270 0.703 7.042
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/DelayedTensor.Rcheck/00check.log’
for details.
DelayedTensor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL DelayedTensor ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘DelayedTensor’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘kronecker’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag<-’ in package ‘DelayedTensor’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedTensor)
DelayedTensor.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("DelayedArray")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: S4Arrays
Loading required package: abind
Attaching package: 'S4Arrays'
The following object is masked from 'package:abind':
abind
The following object is masked from 'package:base':
rowsum
Loading required package: SparseArray
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
apply, scale, sweep
> # library("HDF5Array") # comment out
> # library("BiocSingular") # comment out
> library("rTensor")
Attaching package: 'rTensor'
The following object is masked from 'package:S4Vectors':
fold
> library("DelayedRandomArray")
> # library("irlba") # comment out
> # library("Matrix") # comment out
> library("einsum")
> library("DelayedTensor")
Attaching package: 'DelayedTensor'
The following object is masked from 'package:einsum':
einsum
The following objects are masked from 'package:rTensor':
cp, cs_fold, cs_unfold, fnorm, fold, hadamard_list, hosvd,
innerProd, k_fold, k_unfold, khatri_rao, khatri_rao_list,
kronecker_list, matvec, modeMean, modeSum, mpca, pvd, rs_fold,
rs_unfold, ttl, ttm, tucker, unfold, unmatvec, vec
The following object is masked from 'package:S4Vectors':
fold
The following objects are masked from 'package:Matrix':
diag, diag<-, kronecker
The following object is masked from 'package:methods':
kronecker
The following objects are masked from 'package:base':
diag, diag<-, kronecker
> library("reticulate")
> library("testthat")
> library("HDF5Array")
Loading required package: rhdf5
Attaching package: 'HDF5Array'
The following object is masked from 'package:rhdf5':
h5ls
>
> # Setting
> options(testthat.use_colours = FALSE)
> options(delayedtensor.sparse = FALSE)
> options(delayedtensor.verbose = FALSE)
> setHDF5DumpCompressionLevel(level=9L)
> source("testthat/test_Einsum_objects.R")
>
> # source("../R/Decomp.R") # comment out
> # source("../R/Einsum.R") # comment out
> # source("../R/Generics.R") # comment out
> # source("../R/Global-settings.R") # comment out
> # source("../R/Misc.R") # comment out
> # source("../R/SVD.R") # comment out
> # source("../R/Utils.R") # comment out
> # source("../R/zzz.R") # comment out
>
> # for(size in c(1E+9,1E+8,1E+7,1E+6,1E+5,1E+4,1E+3,1E+2,50,20:1)){ # comment out
> # setAutoBlockSize(size=size) # comment out
> # getAutoBlockSize() # comment out
> test_file("testthat/test_Generics.R")
══ Testing test_Generics.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
── Error ('test_Generics.R:168:1'): (code run outside of `test_that()`) ────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(tnsr@data, tnsr2@data, as.array(darr2)) at test_Generics.R:168:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
> test_file("testthat/test_Misc.R")
══ Testing test_Misc.R ═════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
── Error ('test_Misc.R:29:1'): (code run outside of `test_that()`) ─────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Misc.R:29:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
> # test_file("testthat/test_SVD.R") # comment out
> test_file("testthat/test_4thorder.R")
══ Testing test_4thorder.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ][1] "unfold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ][1] "modeSum"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ][1] "innerProd"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ][1] "vec"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ][1] "fold"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
── Error ('test_4thorder.R:91:1'): (code run outside of `test_that()`) ─────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(arr4, tnsr4_2@data, as.array(darr4_2)) at test_4thorder.R:91:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
> test_file("testthat/test_Einsum.R")
══ Testing test_Einsum.R ═══════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
── Error ('test_Einsum.R:4:1'): (code run outside of `test_that()`) ────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Einsum.R:4:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
> # gc();gc() # comment out
> # } # comment out
>
> # setAutoBlockSize(size=1E+8)
> # test_file("testthat/test_Decomp.R")
> # test_file("testthat/test_Einsum_Py.R") # comment out
> # source("testthat/test_Verbose.R")
> # source("testthat/test_Sparse.R")
>
> # Profiling
> # source("testthat/test_SuperBig.R") # comment out
>
> proc.time()
user system elapsed
21.924 2.072 24.230
DelayedTensor.Rcheck/DelayedTensor-Ex.timings
| name | user | system | elapsed | |
| DelayedDiagonalArray | 0.076 | 0.002 | 0.078 | |
| DelayedTensor-package | 0.000 | 0.001 | 0.001 | |
| cbind_list | 0.640 | 0.083 | 0.729 | |
| cp | 149.763 | 17.716 | 176.817 | |
| cs_fold | 0.460 | 0.051 | 0.517 | |
| cs_unfold | 0.385 | 0.039 | 0.427 | |
| diag | 0.543 | 0.045 | 0.591 | |
| einsum | 1.190 | 0.120 | 1.324 | |
| fnorm | 0.200 | 0.020 | 0.222 | |
| fold | 0.536 | 0.061 | 0.603 | |
| getSparse | 0.001 | 0.000 | 0.000 | |
| getVerbose | 0 | 0 | 0 | |
| hadamard | 0.285 | 0.033 | 0.323 | |
| hadamard_list | 0.325 | 0.033 | 0.361 | |
| hosvd | 3.638 | 0.404 | 4.094 | |
| human_mid_brain | 0.002 | 0.002 | 0.004 | |
| innerProd | 0.187 | 0.020 | 0.209 | |
| k_fold | 0.543 | 0.063 | 0.613 | |
| k_unfold | 0.337 | 0.037 | 0.377 | |
| khatri_rao | 0.282 | 0.031 | 0.317 | |
| khatri_rao_list | 0.299 | 0.031 | 0.334 | |
| kronecker | 0.239 | 0.023 | 0.263 | |
| kronecker_list | 0.359 | 0.035 | 0.401 | |
| list_rep | 0.378 | 0.023 | 0.404 | |
| matvec | 0.362 | 0.040 | 0.406 | |
| modeMean | 1.571 | 0.185 | 1.776 | |
| modeSum | 1.269 | 0.141 | 1.423 | |
| modebind_list | 1.313 | 0.149 | 1.479 | |
| mouse_mid_brain | 0.001 | 0.001 | 0.003 | |
| mpca | 10.689 | 1.200 | 12.028 | |
| outerProd | 0.440 | 0.039 | 0.482 | |
| pvd | 6.270 | 0.703 | 7.042 | |
| rbind_list | 0.545 | 0.060 | 0.611 | |
| rs_fold | 0.574 | 0.065 | 0.644 | |
| rs_unfold | 0.344 | 0.038 | 0.385 | |
| setSparse | 0 | 0 | 0 | |
| setVerbose | 0.000 | 0.001 | 0.000 | |
| ttl | 1.169 | 0.127 | 1.308 | |
| ttm | 0.813 | 0.085 | 0.908 | |
| tucker | 22.136 | 2.578 | 24.973 | |
| unfold | 0.352 | 0.040 | 0.395 | |
| unmatvec | 0.522 | 0.063 | 0.592 | |
| vec | 0.273 | 0.031 | 0.306 | |