Koki Tsuyuzaki
| Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/DelayedTensor |
| git_branch: devel |
| git_last_commit: e011fbe |
| git_last_commit_date: 2023-10-24 11:34:20 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:40:37 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 536/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedTensor 1.9.0 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the DelayedTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: DelayedTensor |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings DelayedTensor_1.9.0.tar.gz |
| StartedAt: 2024-03-28 04:36:17 -0000 (Thu, 28 Mar 2024) |
| EndedAt: 2024-03-28 04:43:51 -0000 (Thu, 28 Mar 2024) |
| EllapsedTime: 453.8 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedTensor.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings DelayedTensor_1.9.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/DelayedTensor.Rcheck’
* using R Under development (unstable) (2024-03-19 r86153)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DelayedTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DelayedTensor’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DelayedTensor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.block_khatri_rao_IDX2: no visible global function definition for
‘Lindex2Mindex’
.block_khatri_rao_IDX2: no visible global function definition for
‘Mindex2Lindex’
.block_kroneckerIDX: no visible global function definition for
‘Lindex2Mindex’
.block_kroneckerIDX: no visible global function definition for
‘Mindex2Lindex’
.block_reshape: no visible global function definition for
‘Lindex2Mindex’
.block_vec: no visible global function definition for ‘Mindex2Lindex’
.read_block_einsum: no visible global function definition for
‘Mindex2Lindex’
.tickMarksScheduling2: no visible global function definition for
‘Mindex2Lindex’
.write_block_einsum: no visible global function definition for
‘Mindex2Lindex’
einsum: no visible global function definition for ‘Lindex2Mindex’
Undefined global functions or variables:
Lindex2Mindex Mindex2Lindex
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
human_mid_brain.rda 677Kb 441Kb xz
mouse_mid_brain.rda 761Kb 511Kb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cp 166.070 4.140 173.955
tucker 24.383 0.595 25.056
mpca 11.318 0.243 11.590
pvd 6.649 0.156 6.823
hosvd 4.078 0.108 5.342
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.19-bioc/meat/DelayedTensor.Rcheck/00check.log’
for details.
DelayedTensor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL DelayedTensor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library’ * installing *source* package ‘DelayedTensor’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘kronecker’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag<-’ in package ‘DelayedTensor’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedTensor)
DelayedTensor.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("DelayedArray")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: S4Arrays
Loading required package: abind
Attaching package: 'S4Arrays'
The following object is masked from 'package:abind':
abind
The following object is masked from 'package:base':
rowsum
Loading required package: SparseArray
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
apply, scale, sweep
> # library("HDF5Array") # comment out
> # library("BiocSingular") # comment out
> library("rTensor")
Attaching package: 'rTensor'
The following object is masked from 'package:S4Vectors':
fold
> library("DelayedRandomArray")
> # library("irlba") # comment out
> # library("Matrix") # comment out
> library("einsum")
> library("DelayedTensor")
Attaching package: 'DelayedTensor'
The following object is masked from 'package:einsum':
einsum
The following objects are masked from 'package:rTensor':
cp, cs_fold, cs_unfold, fnorm, fold, hadamard_list, hosvd,
innerProd, k_fold, k_unfold, khatri_rao, khatri_rao_list,
kronecker_list, matvec, modeMean, modeSum, mpca, pvd, rs_fold,
rs_unfold, ttl, ttm, tucker, unfold, unmatvec, vec
The following object is masked from 'package:S4Vectors':
fold
The following objects are masked from 'package:Matrix':
diag, diag<-, kronecker
The following object is masked from 'package:methods':
kronecker
The following objects are masked from 'package:base':
diag, diag<-, kronecker
> library("reticulate")
> library("testthat")
> library("HDF5Array")
Loading required package: rhdf5
Attaching package: 'HDF5Array'
The following object is masked from 'package:rhdf5':
h5ls
>
> # Setting
> options(testthat.use_colours = FALSE)
> options(delayedtensor.sparse = FALSE)
> options(delayedtensor.verbose = FALSE)
> setHDF5DumpCompressionLevel(level=9L)
> source("testthat/test_Einsum_objects.R")
>
> # source("../R/Decomp.R") # comment out
> # source("../R/Einsum.R") # comment out
> # source("../R/Generics.R") # comment out
> # source("../R/Global-settings.R") # comment out
> # source("../R/Misc.R") # comment out
> # source("../R/SVD.R") # comment out
> # source("../R/Utils.R") # comment out
> # source("../R/zzz.R") # comment out
>
> # for(size in c(1E+9,1E+8,1E+7,1E+6,1E+5,1E+4,1E+3,1E+2,50,20:1)){ # comment out
> # setAutoBlockSize(size=size) # comment out
> # getAutoBlockSize() # comment out
> test_file("testthat/test_Generics.R")
══ Testing test_Generics.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
── Error ('test_Generics.R:168:1'): (code run outside of `test_that()`) ────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(tnsr@data, tnsr2@data, as.array(darr2)) at test_Generics.R:168:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
> test_file("testthat/test_Misc.R")
══ Testing test_Misc.R ═════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
── Error ('test_Misc.R:29:1'): (code run outside of `test_that()`) ─────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Misc.R:29:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
> # test_file("testthat/test_SVD.R") # comment out
> test_file("testthat/test_4thorder.R")
══ Testing test_4thorder.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ][1] "unfold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ][1] "modeSum"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ][1] "innerProd"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ][1] "vec"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ][1] "fold"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
── Error ('test_4thorder.R:91:1'): (code run outside of `test_that()`) ─────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(arr4, tnsr4_2@data, as.array(darr4_2)) at test_4thorder.R:91:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
> test_file("testthat/test_Einsum.R")
══ Testing test_Einsum.R ═══════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
── Error ('test_Einsum.R:4:1'): (code run outside of `test_that()`) ────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Einsum.R:4:1
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
> # gc();gc() # comment out
> # } # comment out
>
> # setAutoBlockSize(size=1E+8)
> # test_file("testthat/test_Decomp.R")
> # test_file("testthat/test_Einsum_Py.R") # comment out
> # source("testthat/test_Verbose.R")
> # source("testthat/test_Sparse.R")
>
> # Profiling
> # source("testthat/test_SuperBig.R") # comment out
>
> proc.time()
user system elapsed
24.401 0.704 25.167
DelayedTensor.Rcheck/DelayedTensor-Ex.timings
| name | user | system | elapsed | |
| DelayedDiagonalArray | 0.095 | 0.000 | 0.095 | |
| DelayedTensor-package | 0 | 0 | 0 | |
| cbind_list | 0.646 | 0.032 | 0.678 | |
| cp | 166.070 | 4.140 | 173.955 | |
| cs_fold | 0.491 | 0.008 | 0.501 | |
| cs_unfold | 0.342 | 0.016 | 0.359 | |
| diag | 0.579 | 0.020 | 0.600 | |
| einsum | 1.234 | 0.024 | 1.261 | |
| fnorm | 0.167 | 0.000 | 0.168 | |
| fold | 0.585 | 0.011 | 0.599 | |
| getSparse | 0 | 0 | 0 | |
| getVerbose | 0 | 0 | 0 | |
| hadamard | 0.234 | 0.019 | 0.255 | |
| hadamard_list | 0.296 | 0.004 | 0.301 | |
| hosvd | 4.078 | 0.108 | 5.342 | |
| human_mid_brain | 0.002 | 0.000 | 0.002 | |
| innerProd | 0.180 | 0.008 | 0.188 | |
| k_fold | 0.567 | 0.016 | 0.584 | |
| k_unfold | 0.374 | 0.012 | 0.386 | |
| khatri_rao | 0.297 | 0.000 | 0.297 | |
| khatri_rao_list | 0.268 | 0.012 | 0.280 | |
| kronecker | 0.153 | 0.008 | 0.161 | |
| kronecker_list | 0.279 | 0.016 | 0.295 | |
| list_rep | 0.306 | 0.004 | 0.311 | |
| matvec | 0.363 | 0.004 | 0.368 | |
| modeMean | 1.617 | 0.040 | 1.660 | |
| modeSum | 1.249 | 0.044 | 1.297 | |
| modebind_list | 1.863 | 0.056 | 1.924 | |
| mouse_mid_brain | 0.000 | 0.000 | 0.001 | |
| mpca | 11.318 | 0.243 | 11.590 | |
| outerProd | 0.363 | 0.004 | 0.367 | |
| pvd | 6.649 | 0.156 | 6.823 | |
| rbind_list | 0.495 | 0.008 | 0.504 | |
| rs_fold | 0.532 | 0.028 | 0.561 | |
| rs_unfold | 0.312 | 0.004 | 0.317 | |
| setSparse | 0.000 | 0.000 | 0.001 | |
| setVerbose | 0.000 | 0.000 | 0.001 | |
| ttl | 1.146 | 0.012 | 1.164 | |
| ttm | 0.778 | 0.019 | 0.800 | |
| tucker | 24.383 | 0.595 | 25.056 | |
| unfold | 0.340 | 0.008 | 0.348 | |
| unmatvec | 0.565 | 0.020 | 0.586 | |
| vec | 0.247 | 0.000 | 0.248 | |