Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-01-22 11:55:02 -0500 (Fri, 22 Jan 2021).
TO THE DEVELOPERS/MAINTAINERS OF THE cellbaseR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 250/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cellbaseR 1.14.0 Mohammed OE Abdallah
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
nebbiolo1 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | ![]() | ||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() |
Package: cellbaseR |
Version: 1.14.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/cellbaseR_1.14.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.14.0.zip && rm cellbaseR_1.14.0.tar.gz cellbaseR_1.14.0.zip |
StartedAt: 2021-01-21 18:36:14 -0500 (Thu, 21 Jan 2021) |
EndedAt: 2021-01-21 18:37:34 -0500 (Thu, 21 Jan 2021) |
EllapsedTime: 80.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/cellbaseR_1.14.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.14.0.zip && rm cellbaseR_1.14.0.tar.gz cellbaseR_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 738k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 738k 100 738k 0 0 9196k 0 --:--:-- --:--:-- --:--:-- 9593k install for i386 * installing *source* package 'cellbaseR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellbaseR' finding HTML links ... done AnnotateVcf-CellBaseR-method html CellBaseParam-class html CellBaseParam html CellBaseR-class html CellBaseR html cellbaseR-package html createGeneModel html Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIfPK7s/R.INSTALL260c73cd7cc9/cellbaseR/man/createGeneModel.Rd:23: file link 'GeneRegionTrack' in package 'Gviz' does not exist and so has been treated as a topic getCaddScores html getCellBase-CellBaseR-method html getCellBaseResourceHelp html getChromosomeInfo-CellBaseR-method html getClinical-CellBaseR-method html getClinicalByGene html getClinicalByRegion html getConservationByRegion html getGene-CellBaseR-method html getGeneInfo html getMeta-CellBaseR-method html getProtein-CellBaseR-method html getProteinInfo html getRegion-CellBaseR-method html getRegulatoryByRegion html getSnp-CellBaseR-method html getSnpByGene html getTf-CellBaseR-method html getTfbsByRegion html getTranscript-CellBaseR-method html getTranscriptByGene html getVariant-CellBaseR-method html getVariantAnnotation html getXref-CellBaseR-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cellbaseR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cellbaseR' as cellbaseR_1.14.0.zip * DONE (cellbaseR) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'cellbaseR' successfully unpacked and MD5 sums checked