Mohammed OE Abdallah
| Snapshot Date: 2021-01-21 14:42:12 -0500 (Thu, 21 Jan 2021) |
| URL: https://git.bioconductor.org/packages/cellbaseR |
| Branch: RELEASE_3_12 |
| Last Commit: 6ecfb00 |
| Last Changed Date: 2020-10-27 11:23:55 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-01-22 11:55:02 -0500 (Fri, 22 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE cellbaseR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 250/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cellbaseR 1.14.0 Mohammed OE Abdallah
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||
| nebbiolo1 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: cellbaseR |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/cellbaseR_1.14.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.14.0.zip && rm cellbaseR_1.14.0.tar.gz cellbaseR_1.14.0.zip |
| StartedAt: 2021-01-21 18:36:14 -0500 (Thu, 21 Jan 2021) |
| EndedAt: 2021-01-21 18:37:34 -0500 (Thu, 21 Jan 2021) |
| EllapsedTime: 80.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/cellbaseR_1.14.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.14.0.zip && rm cellbaseR_1.14.0.tar.gz cellbaseR_1.14.0.zip
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install for i386
* installing *source* package 'cellbaseR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cellbaseR'
finding HTML links ... done
AnnotateVcf-CellBaseR-method html
CellBaseParam-class html
CellBaseParam html
CellBaseR-class html
CellBaseR html
cellbaseR-package html
createGeneModel html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpIfPK7s/R.INSTALL260c73cd7cc9/cellbaseR/man/createGeneModel.Rd:23: file link 'GeneRegionTrack' in package 'Gviz' does not exist and so has been treated as a topic
getCaddScores html
getCellBase-CellBaseR-method html
getCellBaseResourceHelp html
getChromosomeInfo-CellBaseR-method html
getClinical-CellBaseR-method html
getClinicalByGene html
getClinicalByRegion html
getConservationByRegion html
getGene-CellBaseR-method html
getGeneInfo html
getMeta-CellBaseR-method html
getProtein-CellBaseR-method html
getProteinInfo html
getRegion-CellBaseR-method html
getRegulatoryByRegion html
getSnp-CellBaseR-method html
getSnpByGene html
getTf-CellBaseR-method html
getTfbsByRegion html
getTranscript-CellBaseR-method html
getTranscriptByGene html
getVariant-CellBaseR-method html
getVariantAnnotation html
getXref-CellBaseR-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cellbaseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cellbaseR' as cellbaseR_1.14.0.zip
* DONE (cellbaseR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'cellbaseR' successfully unpacked and MD5 sums checked