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INSTALL report for brendaDb on tokay1

This page was generated on 2020-08-07 12:18:20 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE brendaDb PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 197/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
brendaDb 1.3.0
Yi Zhou
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/brendaDb
Branch: master
Last Commit: b348776
Last Changed Date: 2020-04-27 15:29:29 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: brendaDb
Version: 1.3.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/brendaDb_1.3.0.tar.gz && rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brendaDb.buildbin-libdir brendaDb_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL brendaDb_1.3.0.zip && rm brendaDb_1.3.0.tar.gz brendaDb_1.3.0.zip
StartedAt: 2020-08-06 17:57:31 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 17:58:24 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 53.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/brendaDb_1.3.0.tar.gz && rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brendaDb.buildbin-libdir brendaDb_1.3.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL brendaDb_1.3.0.zip && rm brendaDb_1.3.0.tar.gz brendaDb_1.3.0.zip
###
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install for i386

* installing *source* package 'brendaDb' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/brendaDb.buildbin-libdir/00LOCK-brendaDb/00new/brendaDb/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'brendaDb'
    finding HTML links ... done
    BiocycPathwayEnzymes                    html  
    BiocycPathwayGenes                      html  
    CleanECNumber                           html  
    ConfigBPCores                           html  
    DownloadBrenda                          html  
    ExtractField                            html  
    ID2Enzyme                               html  
    InitBrendaDeprecatedEntry               html  
    InitBrendaEntry                         html  
    ParseGeneric                            html  
    ParseNoDescription                      html  
    ParseProtein                            html  
    ParseProteinNum                         html  
    ParseReaction                           html  
    ParseRecommendedName                    html  
    ParseReference                          html  
    ParseSystematicName                     html  
    PrettyPrintBrendaEntry                  html  
    PrintTreeHelper                         html  
    QueryBrenda                             html  
    QueryBrendaBase                         html  
    ReadBrenda                              html  
    ReadBrendaFile                          html  
    SelectOrganism                          html  
    SeparateEntries                         html  
    SeparateSubentries                      html  
    ShowFields                              html  
    acronyms                                html  
    brendaDb-package                        html  
    print.brenda.entries                    html  
    print.brenda.entry                      html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'brendaDb' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/brendaDb.buildbin-libdir/brendaDb/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'brendaDb' as brendaDb_1.3.0.zip
* DONE (brendaDb)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'brendaDb' successfully unpacked and MD5 sums checked