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BUILD BIN report for CeTF on merida1

This page was generated on 2021-01-24 11:56:48 -0500 (Sun, 24 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE CeTF PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 263/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CeTF 1.2.4
Carlos Alberto Oliveira de Biagi Junior
Snapshot Date: 2021-01-23 14:40:16 -0500 (Sat, 23 Jan 2021)
URL: https://git.bioconductor.org/packages/CeTF
Branch: RELEASE_3_12
Last Commit: 2896169
Last Changed Date: 2020-11-23 09:24:27 -0500 (Mon, 23 Nov 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CeTF
Version: 1.2.4
Command: rm -rf CeTF.buildbin-libdir && mkdir CeTF.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CeTF_1.2.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CeTF.buildbin-libdir
StartedAt: 2021-01-24 07:11:29 -0500 (Sun, 24 Jan 2021)
EndedAt: 2021-01-24 07:12:39 -0500 (Sun, 24 Jan 2021)
EllapsedTime: 69.6 seconds
RetCode: 0
Status:  OK 
PackageFile: CeTF_1.2.4.tgz
PackageFileSize: 2.685 MiB

Command output

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###
### Running command:
###
###   rm -rf CeTF.buildbin-libdir && mkdir CeTF.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CeTF_1.2.4.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CeTF.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CeTF.buildbin-libdir CeTF_1.2.4.tar.gz'
>>>>>>> 

* installing *source* package ‘CeTF’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c PCIT.cpp -o PCIT.o
In file included from PCIT.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:34:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:34:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CeTF.so PCIT.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/CeTF.buildbin-libdir/00LOCK-CeTF/00new/CeTF/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CeTF)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CeTF.buildbin-libdir/CeTF/libs/CeTF.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "CeTF.buildbin-libdir/CeTF/libs/CeTF.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "CeTF.buildbin-libdir/CeTF/libs/CeTF.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "CeTF.buildbin-libdir/CeTF/libs/CeTF.so"