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INSTALL report for BCRANK on tokay1

This page was generated on 2020-08-11 11:36:55 -0400 (Tue, 11 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BCRANK PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 122/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BCRANK 1.51.0
Adam Ameur
Snapshot Date: 2020-08-10 14:50:56 -0400 (Mon, 10 Aug 2020)
URL: https://git.bioconductor.org/packages/BCRANK
Branch: master
Last Commit: 35c15f3
Last Changed Date: 2020-04-27 14:16:34 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  NA 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BCRANK
Version: 1.51.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BCRANK_1.51.0.tar.gz && rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BCRANK.buildbin-libdir BCRANK_1.51.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BCRANK_1.51.0.zip && rm BCRANK_1.51.0.tar.gz BCRANK_1.51.0.zip
StartedAt: 2020-08-10 17:11:24 -0400 (Mon, 10 Aug 2020)
EndedAt: 2020-08-10 17:12:05 -0400 (Mon, 10 Aug 2020)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BCRANK_1.51.0.tar.gz && rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BCRANK.buildbin-libdir BCRANK_1.51.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BCRANK_1.51.0.zip && rm BCRANK_1.51.0.tar.gz BCRANK_1.51.0.zip
###
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install for i386

* installing *source* package 'BCRANK' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c match_consensus.c -o match_consensus.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BCRANK.dll tmp.def init.o match_consensus.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BCRANK.buildbin-libdir/00LOCK-BCRANK/00new/BCRANK/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BCRANK'
    finding HTML links ... done
    BCRANK-internal                         html  
    BCRANKmatch-class                       html  
    BCRANKout                               html  
    BCRANKresult-class                      html  
    BCRANKsearch-class                      html  
    bcrank                                  html  
    matchingSites                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BCRANK' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c match_consensus.c -o match_consensus.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BCRANK.dll tmp.def init.o match_consensus.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/BCRANK.buildbin-libdir/BCRANK/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BCRANK' as BCRANK_1.51.0.zip
* DONE (BCRANK)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'BCRANK' successfully unpacked and MD5 sums checked