Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for BCRANK on merida1

This page was generated on 2020-12-01 12:01:00 -0500 (Tue, 01 Dec 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BCRANK PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 130/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BCRANK 1.52.0
Adam Ameur
Snapshot Date: 2020-11-30 14:42:56 -0500 (Mon, 30 Nov 2020)
URL: https://git.bioconductor.org/packages/BCRANK
Branch: RELEASE_3_12
Last Commit: 4976ef5
Last Changed Date: 2020-10-27 10:32:55 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BCRANK
Version: 1.52.0
Command: rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BCRANK_1.52.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BCRANK.buildbin-libdir
StartedAt: 2020-12-01 07:40:37 -0500 (Tue, 01 Dec 2020)
EndedAt: 2020-12-01 07:41:45 -0500 (Tue, 01 Dec 2020)
EllapsedTime: 68.3 seconds
RetCode: 0
Status:  OK 
PackageFile: BCRANK_1.52.0.tgz
PackageFileSize: 2.357 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BCRANK.buildbin-libdir && mkdir BCRANK.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BCRANK_1.52.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BCRANK.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BCRANK.buildbin-libdir BCRANK_1.52.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BCRANK’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c match_consensus.c -o match_consensus.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BCRANK.so init.o match_consensus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BCRANK.buildbin-libdir/00LOCK-BCRANK/00new/BCRANK/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BCRANK)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BCRANK.buildbin-libdir/BCRANK/libs/BCRANK.so"