Multiple platform build/check report for BioC 3.19 - CHECK results for spatialDE on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4709
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4483
merida1	macOS 12.7.4 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4512
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for spatialDE on nebbiolo1

To the developers/maintainers of the spatialDE package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/spatialDE.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: spatialDE

Version: 1.10.0

Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings spatialDE_1.10.0.tar.gz

StartedAt: 2024-07-08 04:04:03 -0400 (Mon, 08 Jul 2024)

EndedAt: 2024-07-08 04:11:04 -0400 (Mon, 08 Jul 2024)

EllapsedTime: 420.9 seconds

RetCode: 0

Status: OK

CheckDir: spatialDE.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:spatialDE.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings spatialDE_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘spatialDE/DESCRIPTION’ ... OK
* this is package ‘spatialDE’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘spatialDE’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
spatial_patterns 55.447  1.586  55.132
FSV_sig           6.012  1.026   6.716
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/spatialDE.Rcheck/00check.log’
for details.

Installation output

spatialDE.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL spatialDE
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘spatialDE’ ...
** using non-staged installation via StagedInstall field
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (spatialDE)

Tests output

spatialDE.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(spatialDE)
> 
> test_check("spatialDE")
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians


Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 45%|████▌     | 45/100 [00:00<00:00, 442.16it/s][A

 90%|█████████ | 90/100 [00:00<00:00, 432.23it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:02,  4.32it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 36%|███▌      | 36/100 [00:00<00:00, 359.63it/s][A

 73%|███████▎  | 73/100 [00:00<00:00, 363.84it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:00<00:02,  3.81it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 328.09it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 326.40it/s][A

 99%|█████████▉| 99/100 [00:00<00:00, 318.30it/s][A

                                                 [A
Models:  30%|███       | 3/10 [00:00<00:02,  3.50it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 322.74it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 311.04it/s][A

 98%|█████████▊| 98/100 [00:00<00:00, 302.00it/s][A

                                                 [A
Models:  40%|████      | 4/10 [00:01<00:01,  3.30it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 31%|███       | 31/100 [00:00<00:00, 306.52it/s][A

 62%|██████▏   | 62/100 [00:00<00:00, 291.71it/s][A

 92%|█████████▏| 92/100 [00:00<00:00, 294.23it/s][A

                                                 [A
Models:  50%|█████     | 5/10 [00:01<00:01,  3.16it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 310.73it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 299.90it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 300.02it/s][A

                                                 [A
Models:  60%|██████    | 6/10 [00:01<00:01,  3.10it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 315.65it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 303.92it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 305.39it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:02<00:00,  3.08it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 313.14it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 303.11it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 300.30it/s][A

                                                 [A
Models:  80%|████████  | 8/10 [00:02<00:00,  3.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 20%|██        | 20/100 [00:00<00:00, 193.08it/s][A

 50%|█████     | 50/100 [00:00<00:00, 251.33it/s][A

 82%|████████▏ | 82/100 [00:00<00:00, 277.49it/s][A

                                                 [A
Models:  90%|█████████ | 9/10 [00:02<00:00,  2.93it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 339.10it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 338.10it/s][A

                                                 [A
Models: 100%|██████████| 10/10 [00:03<00:00,  3.03it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.15it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 45%|████▌     | 45/100 [00:00<00:00, 445.97it/s][A

 90%|█████████ | 90/100 [00:00<00:00, 433.93it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:02,  4.29it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 349.85it/s][A

 70%|███████   | 70/100 [00:00<00:00, 323.87it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:00<00:02,  3.56it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 339.28it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 310.27it/s][A

100%|██████████| 100/100 [00:00<00:00, 301.64it/s][A

                                                  [A
Models:  30%|███       | 3/10 [00:00<00:02,  3.30it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 319.64it/s][A

 65%|██████▌   | 65/100 [00:00<00:00, 296.12it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 294.93it/s][A

                                                 [A
Models:  40%|████      | 4/10 [00:01<00:01,  3.15it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 321.59it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 297.38it/s][A

 96%|█████████▌| 96/100 [00:00<00:00, 291.54it/s][A

                                                 [A
Models:  50%|█████     | 5/10 [00:01<00:01,  3.07it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 322.25it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 301.34it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 293.22it/s][A

                                                 [A
Models:  60%|██████    | 6/10 [00:01<00:01,  3.03it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 324.39it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 305.67it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 303.70it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:02<00:00,  3.03it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 323.30it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 304.49it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 299.68it/s][A

                                                 [A
Models:  80%|████████  | 8/10 [00:02<00:00,  3.02it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 330.05it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 313.38it/s][A

100%|██████████| 100/100 [00:00<00:00, 312.83it/s][A

                                                  [A
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 337.68it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 319.85it/s][A

                                                 [A
Models: 100%|██████████| 10/10 [00:03<00:00,  3.09it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.13it/s]
/var/cache/basilisk/1.16.0/spatialDE/1.10.0/env/lib/python3.9/site-packages/pandas/core/internals/blocks.py:351: RuntimeWarning: invalid value encountered in log
  result = func(self.values, **kwargs)

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 427.95it/s][A

 90%|█████████ | 90/100 [00:00<00:00, 452.35it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:02,  4.44it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 360.42it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 348.86it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:00<00:02,  3.78it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 336.72it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 316.19it/s][A

100%|██████████| 100/100 [00:00<00:00, 309.01it/s][A

                                                  [A
Models:  30%|███       | 3/10 [00:00<00:02,  3.44it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 324.38it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 304.66it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 299.77it/s][A

                                                 [A
Models:  40%|████      | 4/10 [00:01<00:01,  3.25it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 316.50it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 301.47it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 299.87it/s][A

                                                 [A
Models:  50%|█████     | 5/10 [00:01<00:01,  3.15it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 320.77it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 299.43it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 297.20it/s][A

                                                 [A
Models:  60%|██████    | 6/10 [00:01<00:01,  3.09it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 316.52it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 299.83it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 297.40it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:02<00:00,  3.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 331.86it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 311.14it/s][A

100%|██████████| 100/100 [00:00<00:00, 309.16it/s][A

                                                  [A
Models:  80%|████████  | 8/10 [00:02<00:00,  3.06it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 339.94it/s][A

 69%|██████▉   | 69/100 [00:00<00:00, 322.36it/s][A

                                                 [A
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.10it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 347.82it/s][A

 70%|███████   | 70/100 [00:00<00:00, 343.47it/s][A

                                                 [A
Models: 100%|██████████| 10/10 [00:03<00:00,  3.17it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.21it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 43%|████▎     | 43/100 [00:00<00:00, 419.70it/s][A

 91%|█████████ | 91/100 [00:00<00:00, 454.36it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:02,  4.43it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 358.55it/s][A

 73%|███████▎  | 73/100 [00:00<00:00, 345.82it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:00<00:02,  3.75it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 331.37it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 315.20it/s][A

100%|██████████| 100/100 [00:00<00:00, 310.51it/s][A

                                                  [A
Models:  30%|███       | 3/10 [00:00<00:02,  3.43it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 315.54it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 301.67it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 301.94it/s][A

                                                 [A
Models:  40%|████      | 4/10 [00:01<00:01,  3.25it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 312.03it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 299.95it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 296.25it/s][A

                                                 [A
Models:  50%|█████     | 5/10 [00:01<00:01,  3.14it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 309.50it/s][A

 63%|██████▎   | 63/100 [00:00<00:00, 295.17it/s][A

 93%|█████████▎| 93/100 [00:00<00:00, 289.71it/s][A

                                                 [A
Models:  60%|██████    | 6/10 [00:01<00:01,  3.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 321.12it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 308.52it/s][A

 97%|█████████▋| 97/100 [00:00<00:00, 296.31it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:02<00:00,  3.03it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 326.91it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 309.59it/s][A

 98%|█████████▊| 98/100 [00:00<00:00, 308.58it/s][A

                                                 [A
Models:  80%|████████  | 8/10 [00:02<00:00,  3.05it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 339.08it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 320.07it/s][A

                                                 [A
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.08it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 347.65it/s][A

 70%|███████   | 70/100 [00:00<00:00, 341.67it/s][A

                                                 [A
Models: 100%|██████████| 10/10 [00:03<00:00,  3.16it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.19it/s]

Models:   0%|          | 0/10 [00:00<?, ?it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 44%|████▍     | 44/100 [00:00<00:00, 432.30it/s][A

 91%|█████████ | 91/100 [00:00<00:00, 452.65it/s][A

                                                 [A
Models:  10%|█         | 1/10 [00:00<00:02,  4.42it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 37%|███▋      | 37/100 [00:00<00:00, 360.89it/s][A

 74%|███████▍  | 74/100 [00:00<00:00, 346.65it/s][A

                                                 [A
Models:  20%|██        | 2/10 [00:00<00:02,  3.74it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 331.04it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 311.23it/s][A

100%|██████████| 100/100 [00:00<00:00, 309.43it/s][A

                                                  [A
Models:  30%|███       | 3/10 [00:00<00:02,  3.42it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 30%|███       | 30/100 [00:00<00:00, 297.97it/s][A

 60%|██████    | 60/100 [00:00<00:00, 286.99it/s][A

 90%|█████████ | 90/100 [00:00<00:00, 290.82it/s][A

                                                 [A
Models:  40%|████      | 4/10 [00:01<00:01,  3.19it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 315.76it/s][A

 64%|██████▍   | 64/100 [00:00<00:00, 300.66it/s][A

 95%|█████████▌| 95/100 [00:00<00:00, 299.94it/s][A

                                                 [A
Models:  50%|█████     | 5/10 [00:01<00:01,  3.12it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 32%|███▏      | 32/100 [00:00<00:00, 308.47it/s][A

 63%|██████▎   | 63/100 [00:00<00:00, 298.03it/s][A

 93%|█████████▎| 93/100 [00:00<00:00, 294.89it/s][A

                                                 [A
Models:  60%|██████    | 6/10 [00:01<00:01,  3.06it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 33%|███▎      | 33/100 [00:00<00:00, 324.58it/s][A

 66%|██████▌   | 66/100 [00:00<00:00, 312.49it/s][A

 98%|█████████▊| 98/100 [00:00<00:00, 310.21it/s][A

                                                 [A
Models:  70%|███████   | 7/10 [00:02<00:00,  3.07it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 329.06it/s][A

 67%|██████▋   | 67/100 [00:00<00:00, 310.44it/s][A

 99%|█████████▉| 99/100 [00:00<00:00, 306.93it/s][A

                                                 [A
Models:  80%|████████  | 8/10 [00:02<00:00,  3.07it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 34%|███▍      | 34/100 [00:00<00:00, 334.32it/s][A

 68%|██████▊   | 68/100 [00:00<00:00, 318.59it/s][A

100%|██████████| 100/100 [00:00<00:00, 313.03it/s][A

                                                  [A
Models:  90%|█████████ | 9/10 [00:02<00:00,  3.09it/s]

  0%|          | 0/100 [00:00<?, ?it/s][A

 35%|███▌      | 35/100 [00:00<00:00, 343.29it/s][A

 70%|███████   | 70/100 [00:00<00:00, 343.62it/s][A

                                                 [A
Models: 100%|██████████| 10/10 [00:03<00:00,  3.17it/s]
Models: 100%|██████████| 10/10 [00:03<00:00,  3.20it/s]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
> 
> proc.time()
   user  system elapsed 
 48.674   7.358  48.229

Example timings

spatialDE.Rcheck/spatialDE-Ex.timings

name	user	system	elapsed
FSV_sig	6.012	1.026	6.716
mockSVG	0.258	0.048	0.306
modelSearch	3.397	0.356	3.377
model_search	3.015	0.405	2.974
multiGenePlots	3.093	0.358	3.136
regress_out	0.118	0.000	0.118
run	1.510	0.112	1.487
spatialDE	1.637	0.232	1.638
spatialPatterns	1.637	0.949	1.428
spatial_patterns	55.447	1.586	55.132
stabilize	0.129	0.004	0.134