Britta Velten
| Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_19 |
| git_last_commit: a4dfa52 |
| git_last_commit_date: 2024-04-30 11:11:42 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-28 17:46 -0400 (Fri, 28 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 908/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.20.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.20.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings graper_1.20.0.tar.gz |
| StartedAt: 2024-06-27 01:59:12 -0400 (Thu, 27 Jun 2024) |
| EndedAt: 2024-06-27 02:00:44 -0400 (Thu, 27 Jun 2024) |
| EllapsedTime: 91.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:graper.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'graper/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'graper' version '1.20.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'graper' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.19-bioc/R/library/graper/libs/x64/graper.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'F:/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log'
for details.
graper.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL graper
###
##############################################################################
##############################################################################
* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'graper' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/BH/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/RcppArmadillo/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/BH/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fit_graper.cpp -o fit_graper.o
In file included from F:/biocbuild/bbs-3.19-bioc/R/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
from F:/biocbuild/bbs-3.19-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from F:/biocbuild/bbs-3.19-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:15,
from graper_linear_dense_ff.h:2,
from fit_graper.cpp:4:
F:/biocbuild/bbs-3.19-bioc/R/library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
| ^~~~~~~
g++ -shared -s -static-libgcc -o graper.dll tmp.def RcppExports.o fit_graper.o -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRlapack -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-graper/00new/graper/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-909.837
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.263
ELB improved by 330.573
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.904
ELB improved by 54.3587
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.859
ELB improved by 32.0454
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-480.08
ELB improved by 12.7791
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.496
ELB improved by 5.58386
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.831
ELB improved by 3.66467
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.676
ELB improved by 3.15542
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.667
ELB improved by 3.00942
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.712
ELB improved by 2.95427
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.811
ELB improved by 2.90096
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.035
ELB improved by 2.77668
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.511
ELB improved by 2.52359
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.37
ELB improved by 2.14079
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.675
ELB improved by 1.69565
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.397
ELB improved by 1.27713
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.457
ELB improved by 0.94038
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.759
ELB improved by 0.698069
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.219
ELB improved by 0.540334
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.769
ELB improved by 0.450042
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.361
ELB improved by 0.407996
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.969
ELB improved by 0.391325
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.595
ELB improved by 0.373881
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.257
ELB improved by 0.338247
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.971
ELB improved by 0.286453
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.738
ELB improved by 0.233114
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.547
ELB improved by 0.190158
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.387
ELB improved by 0.16022
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.247
ELB improved by 0.140493
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.119
ELB improved by 0.127509
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443
ELB improved by 0.11881
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.887
ELB improved by 0.112907
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.779
ELB improved by 0.108909
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.672
ELB improved by 0.106253
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.568
ELB improved by 0.104563
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.464
ELB improved by 0.103582
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.361
ELB improved by 0.103137
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.258
ELB improved by 0.103106
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.155
ELB improved by 0.103397
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.051
ELB improved by 0.103927
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.946
ELB improved by 0.104609
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.841
ELB improved by 0.105363
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.735
ELB improved by 0.10611
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.628
ELB improved by 0.106789
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.52
ELB improved by 0.107358
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.413
ELB improved by 0.107796
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.304
ELB improved by 0.108109
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.196
ELB improved by 0.108323
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.088
ELB improved by 0.108489
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.979
ELB improved by 0.108677
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.87
ELB improved by 0.108971
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.761
ELB improved by 0.109466
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.65
ELB improved by 0.110269
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.539
ELB improved by 0.111489
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.426
ELB improved by 0.11324
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.31
ELB improved by 0.115638
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.191
ELB improved by 0.1188
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.068
ELB improved by 0.122845
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.94
ELB improved by 0.127893
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.806
ELB improved by 0.134067
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.665
ELB improved by 0.141487
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.515
ELB improved by 0.15027
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.354
ELB improved by 0.160518
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.182
ELB improved by 0.172306
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.996
ELB improved by 0.18565
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.796
ELB improved by 0.200479
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.579
ELB improved by 0.216591
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.345
ELB improved by 0.233649
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.094
ELB improved by 0.251251
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.825
ELB improved by 0.269229
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.536
ELB improved by 0.288403
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.224
ELB improved by 0.312368
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.872
ELB improved by 0.351855
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.437
ELB improved by 0.434835
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.822
ELB improved by 0.615904
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.908
ELB improved by 0.913241
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.706
ELB improved by 1.20199
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.378
ELB improved by 1.32822
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.238
ELB improved by 1.13979
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.451
ELB improved by 0.787361
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.946
ELB improved by 0.505262
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.62
ELB improved by 0.325547
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.408
ELB improved by 0.21192
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.268
ELB improved by 0.140185
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.172
ELB improved by 0.0957931
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.104
ELB improved by 0.0686722
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.051
ELB improved by 0.0521725
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.009
ELB improved by 0.0422532
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.973
ELB improved by 0.0365982
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.939
ELB improved by 0.03396
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.905
ELB improved by 0.0337641
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.869
ELB improved by 0.0358894
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.828
ELB improved by 0.0405299
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.78
ELB improved by 0.0480347
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.722
ELB improved by 0.0586365
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.65
ELB improved by 0.0720741
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.562
ELB improved by 0.0873198
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.46
ELB improved by 0.102509
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.345
ELB improved by 0.11456
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.227
ELB improved by 0.118675
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.116
ELB improved by 0.110445
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.025
ELB improved by 0.0908839
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.958
ELB improved by 0.0671413
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.912
ELB improved by 0.0463299
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.881
ELB improved by 0.0312045
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.859
ELB improved by 0.0212558
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.844
ELB improved by 0.0150103
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.833
ELB improved by 0.0111502
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.824
ELB improved by 0.00875208
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-864.986
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-567.066
ELB improved by 297.92
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-504.817
ELB improved by 62.2491
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.437
ELB improved by 33.3793
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.317
ELB improved by 14.1203
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.237
ELB improved by 7.07983
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.679
ELB improved by 5.55842
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.924
ELB improved by 5.75506
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.514
ELB improved by 6.40962
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.754
ELB improved by 6.76004
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.402
ELB improved by 6.35215
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.03
ELB improved by 5.37226
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.858
ELB improved by 4.17129
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.084
ELB improved by 2.77456
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.409
ELB improved by 1.67431
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.309
ELB improved by 1.10033
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.49
ELB improved by 0.818781
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.825
ELB improved by 0.664907
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.253
ELB improved by 0.572754
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.739
ELB improved by 0.513701
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.266
ELB improved by 0.472793
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.824
ELB improved by 0.44172
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.409
ELB improved by 0.415908
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.016
ELB improved by 0.392977
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.644
ELB improved by 0.371868
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.291
ELB improved by 0.352296
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.957
ELB improved by 0.334376
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.639
ELB improved by 0.318364
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.334
ELB improved by 0.304502
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.041
ELB improved by 0.292954
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.757
ELB improved by 0.283862
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.48
ELB improved by 0.277535
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.205
ELB improved by 0.274962
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.926
ELB improved by 0.279242
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.625
ELB improved by 0.30018
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.256
ELB improved by 0.36942
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.687
ELB improved by 0.568779
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.796
ELB improved by 0.891477
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.904
ELB improved by 0.891704
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.274
ELB improved by 0.630535
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.817
ELB improved by 0.456327
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.449
ELB improved by 0.368545
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.114
ELB improved by 0.334755
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.759
ELB improved by 0.354989
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.304
ELB improved by 0.45454
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.669
ELB improved by 0.635227
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.927
ELB improved by 0.742031
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.322
ELB improved by 0.604831
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.887
ELB improved by 0.434868
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.452
ELB improved by 0.435402
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.748
ELB improved by 0.704411
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.729
ELB improved by 1.0185
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.911
ELB improved by 0.817775
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.412
ELB improved by 0.499414
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.119
ELB improved by 0.293261
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.943
ELB improved by 0.176035
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.829
ELB improved by 0.113852
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.747
ELB improved by 0.0813349
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.684
ELB improved by 0.063877
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.629
ELB improved by 0.0543205
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.58
ELB improved by 0.0493715
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.532
ELB improved by 0.0475401
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.484
ELB improved by 0.0481332
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.434
ELB improved by 0.0506843
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.379
ELB improved by 0.0544666
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.321
ELB improved by 0.0580312
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.262
ELB improved by 0.0591657
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.206
ELB improved by 0.0559028
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.158
ELB improved by 0.0481738
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.12
ELB improved by 0.0381396
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.091
ELB improved by 0.028491
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.07
ELB improved by 0.0207762
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.055
ELB improved by 0.0152347
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.044
ELB improved by 0.0114555
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.035
ELB improved by 0.00891695
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-876.198
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-580.835
ELB improved by 295.363
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.877
ELB improved by 55.9582
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.648
ELB improved by 37.2288
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.604
ELB improved by 18.044
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.514
ELB improved by 7.08958
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.07
ELB improved by 3.44412
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.511
ELB improved by 2.55955
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.206
ELB improved by 2.30472
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.936
ELB improved by 2.27016
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.602
ELB improved by 2.33346
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.163
ELB improved by 2.43898
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.619
ELB improved by 2.54432
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.026
ELB improved by 2.59286
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.505
ELB improved by 2.52137
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.208
ELB improved by 2.29622
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.269
ELB improved by 1.93971
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.747
ELB improved by 1.52153
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.616
ELB improved by 1.1307
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.794
ELB improved by 0.822862
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.194
ELB improved by 0.600003
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.752
ELB improved by 0.442114
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.421
ELB improved by 0.330821
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.168
ELB improved by 0.252759
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.97
ELB improved by 0.198073
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.81
ELB improved by 0.159541
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.678
ELB improved by 0.132028
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.566
ELB improved by 0.111987
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.469
ELB improved by 0.0970272
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.384
ELB improved by 0.0855663
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.307
ELB improved by 0.0765631
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.238
ELB improved by 0.0693266
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.174
ELB improved by 0.0633895
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.116
ELB improved by 0.0584297
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.062
ELB improved by 0.05422
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.011
ELB improved by 0.0505973
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.964
ELB improved by 0.0474425
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.919
ELB improved by 0.0446669
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.877
ELB improved by 0.0422037
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.837
ELB improved by 0.0400015
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.799
ELB improved by 0.0380202
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.763
ELB improved by 0.0362283
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.728
ELB improved by 0.0346001
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.695
ELB improved by 0.0331152
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.663
ELB improved by 0.0317564
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.633
ELB improved by 0.0305096
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.603
ELB improved by 0.029363
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.575
ELB improved by 0.0283065
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.548
ELB improved by 0.0273319
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.521
ELB improved by 0.0264318
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.496
ELB improved by 0.0256001
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.471
ELB improved by 0.0248316
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.447
ELB improved by 0.0241219
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.423
ELB improved by 0.0234672
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.4
ELB improved by 0.0228642
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.378
ELB improved by 0.0223104
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.356
ELB improved by 0.0218036
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.335
ELB improved by 0.0213421
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.314
ELB improved by 0.0209247
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.293
ELB improved by 0.0205506
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.273
ELB improved by 0.0202193
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.253
ELB improved by 0.0199308
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.234
ELB improved by 0.0196857
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.214
ELB improved by 0.0194848
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.195
ELB improved by 0.0193298
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.176
ELB improved by 0.0192227
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.156
ELB improved by 0.0191662
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.137
ELB improved by 0.0191642
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.118
ELB improved by 0.0192213
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.099
ELB improved by 0.0193432
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.079
ELB improved by 0.0195376
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.059
ELB improved by 0.0198137
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.039
ELB improved by 0.0201834
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.018
ELB improved by 0.0206616
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.997
ELB improved by 0.0212675
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.975
ELB improved by 0.0220259
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.952
ELB improved by 0.0229689
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.928
ELB improved by 0.0241388
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.902
ELB improved by 0.0255916
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.875
ELB improved by 0.0274029
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.845
ELB improved by 0.0296749
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.813
ELB improved by 0.0325483
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.777
ELB improved by 0.0362172
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.736
ELB improved by 0.0409512
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.689
ELB improved by 0.0471239
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.633
ELB improved by 0.0552479
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.567
ELB improved by 0.0660111
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.487
ELB improved by 0.0803049
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.388
ELB improved by 0.0992274
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.264
ELB improved by 0.124061
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.107
ELB improved by 0.156243
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.91
ELB improved by 0.197349
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.661
ELB improved by 0.248958
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.349
ELB improved by 0.312108
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.963
ELB improved by 0.386259
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.494
ELB improved by 0.468494
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.94
ELB improved by 0.553999
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.303
ELB improved by 0.637438
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.589
ELB improved by 0.713981
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.808
ELB improved by 0.781031
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.965
ELB improved by 0.842313
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.058
ELB improved by 0.907502
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.092
ELB improved by 0.966219
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.134
ELB improved by 0.957973
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.278
ELB improved by 0.855544
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.555
ELB improved by 0.723162
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.966
ELB improved by 0.588886
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.524
ELB improved by 0.442692
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.209
ELB improved by 0.314543
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.98
ELB improved by 0.228497
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.805
ELB improved by 0.175635
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.667
ELB improved by 0.137775
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.563
ELB improved by 0.104347
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.486
ELB improved by 0.076433
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.428
ELB improved by 0.0580754
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.379
ELB improved by 0.0489011
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.334
ELB improved by 0.0457792
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.287
ELB improved by 0.0462768
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.237
ELB improved by 0.0501346
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.178
ELB improved by 0.059448
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.1
ELB improved by 0.0780136
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.991
ELB improved by 0.108273
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.849
ELB improved by 0.142485
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.691
ELB improved by 0.157857
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.55
ELB improved by 0.141023
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.443
ELB improved by 0.107408
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.367
ELB improved by 0.0757138
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.315
ELB improved by 0.0519065
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.28
ELB improved by 0.0353512
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.255
ELB improved by 0.0242197
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.239
ELB improved by 0.0169069
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.226
ELB improved by 0.0121824
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.217
ELB improved by 0.00915167
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.825
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-599.273
ELB improved by 266.552
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-537.523
ELB improved by 61.7497
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-491.384
ELB improved by 46.139
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.177
ELB improved by 23.2072
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.529
ELB improved by 8.64794
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.161
ELB improved by 4.36837
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.678
ELB improved by 3.48248
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.289
ELB improved by 3.38952
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.822
ELB improved by 3.46721
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.371
ELB improved by 3.45054
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.186
ELB improved by 3.18487
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.514
ELB improved by 2.6724
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.43
ELB improved by 2.08343
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.829
ELB improved by 1.60156
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.547
ELB improved by 1.28153
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.46
ELB improved by 1.08724
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.469
ELB improved by 0.990761
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.479
ELB improved by 0.990232
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.397
ELB improved by 1.08231
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.141
ELB improved by 1.25572
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.661
ELB improved by 1.47961
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.992
ELB improved by 1.66922
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.191
ELB improved by 1.80109
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.262
ELB improved by 1.92905
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.198
ELB improved by 2.06444
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.016
ELB improved by 2.18181
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.789
ELB improved by 2.22643
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.657
ELB improved by 2.13263
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.777
ELB improved by 1.87974
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.245
ELB improved by 1.53155
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.049
ELB improved by 1.1961
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.114
ELB improved by 0.934945
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.393
ELB improved by 0.721343
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.871
ELB improved by 0.521974
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.51
ELB improved by 0.361064
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.257
ELB improved by 0.252898
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.073
ELB improved by 0.183669
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.935
ELB improved by 0.138282
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.828
ELB improved by 0.107469
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.742
ELB improved by 0.08597
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.671
ELB improved by 0.0706381
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.612
ELB improved by 0.0594511
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.561
ELB improved by 0.0510697
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.516
ELB improved by 0.0446068
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.476
ELB improved by 0.0394772
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.441
ELB improved by 0.0352939
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.409
ELB improved by 0.0317988
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.381
ELB improved by 0.0288172
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.354
ELB improved by 0.0262291
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.33
ELB improved by 0.0239503
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.308
ELB improved by 0.0219212
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.288
ELB improved by 0.0200983
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.27
ELB improved by 0.0184498
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.253
ELB improved by 0.0169518
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.237
ELB improved by 0.0155859
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.223
ELB improved by 0.0143376
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.21
ELB improved by 0.0131956
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.198
ELB improved by 0.0121502
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.186
ELB improved by 0.0111933
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.176
ELB improved by 0.010318
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.167
ELB improved by 0.00951794
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.21 0.23 2.45
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.06 | 0.00 | 0.11 | |
| getPIPs | 0.04 | 0.02 | 0.05 | |
| graper | 0.06 | 0.01 | 0.07 | |
| makeExampleData | 0.02 | 0.00 | 0.02 | |
| makeExampleDataWithUnequalGroups | 0.01 | 0.00 | 0.01 | |
| plotELBO | 0.24 | 0.02 | 0.25 | |
| plotGroupPenalties | 1.23 | 0.03 | 1.27 | |
| plotPosterior | 0.66 | 0.03 | 0.69 | |
| predict.graper | 2.09 | 0.06 | 2.15 | |
| print.graper | 0.07 | 0.00 | 0.07 | |